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SNORD54 (small nucleolar RNA, C/D box 54)

Identity

Alias_namesRNU54
RNA, U54 small nuclear
Alias_symbol (synonym)U54
Other alias
HGNC (Hugo) SNORD54
LocusID (NCBI) 26795
Atlas_Id 73965
Location 8q12.1  [Link to chromosome band 8q12]
Location_base_pair Starts at 56986398 and ends at 56986460 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD54   10204
Cards
Entrez_Gene (NCBI)SNORD54  26795  small nucleolar RNA, C/D box 54
AliasesRNU54; U54
GeneCards (Weizmann)SNORD54
Ensembl hg19 (Hinxton) [Gene_View]  chr8:56986398-56986460 [Contig_View]  SNORD54 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:56986398-56986460 [Contig_View]  SNORD54 [Vega]
TCGA cBioPortalSNORD54
AceView (NCBI)SNORD54
Genatlas (Paris)SNORD54
WikiGenes26795
SOURCE (Princeton)SNORD54
Genetics Home Reference (NIH)SNORD54
Genomic and cartography
GoldenPath hg19 (UCSC)SNORD54  -     chr8:56986398-56986460 -  8q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNORD54  -     8q12.1   [Description]    (hg38-Dec_2013)
EnsemblSNORD54 - 8q12.1 [CytoView hg19]  SNORD54 - 8q12.1 [CytoView hg38]
Mapping of homologs : NCBISNORD54 [Mapview hg19]  SNORD54 [Mapview hg38]
Gene and transcription
Genbank (Entrez)X96653
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)SNORD54
Gene ExpressionSNORD54 [ NCBI-GEO ]   SNORD54 [ EBI - ARRAY_EXPRESS ]   SNORD54 [ SEEK ]   SNORD54 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)26795
GTEX Portal (Tissue expression)SNORD54
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD54
DMDM Disease mutations26795
Blocks (Seattle)SNORD54
Protein Interaction databases
BioGRIDSNORD54
STRING (EMBL)SNORD54
ZODIACSNORD54
Ontologies - Pathways
Huge Navigator SNORD54 [HugePedia]
snp3D : Map Gene to Disease26795
BioCentury BCIQSNORD54
ClinGenSNORD54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26795
Chemical/Pharm GKB GenePA34571
Clinical trialSNORD54
Miscellaneous
canSAR (ICR)SNORD54 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD54
EVEXSNORD54
GoPubMedSNORD54
iHOPSNORD54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:45:47 CET 2017

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