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SNORD57 (small nucleolar RNA, C/D box 57)

Identity

Alias_namesRNU57
RNA, U57 small nuclear
Alias_symbol (synonym)U57
Other alias
HGNC (Hugo) SNORD57
LocusID (NCBI) 26792
Atlas_Id 73969
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 2656939 and ends at 2657010 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD57   10207
Cards
Entrez_Gene (NCBI)SNORD57  26792  small nucleolar RNA, C/D box 57
AliasesRNU57; U57
GeneCards (Weizmann)SNORD57
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:2656939-2657010 [Contig_View]  SNORD57 [Vega]
TCGA cBioPortalSNORD57
AceView (NCBI)SNORD57
Genatlas (Paris)SNORD57
WikiGenes26792
SOURCE (Princeton)SNORD57
Genetics Home Reference (NIH)SNORD57
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD57  -     chr20:2656939-2657010 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD57  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblSNORD57 - 20p13 [CytoView hg19]  SNORD57 - 20p13 [CytoView hg38]
Mapping of homologs : NCBISNORD57 [Mapview hg19]  SNORD57 [Mapview hg38]
Gene and transcription
Genbank (Entrez)X96656
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD57
Gene ExpressionSNORD57 [ NCBI-GEO ]   SNORD57 [ EBI - ARRAY_EXPRESS ]   SNORD57 [ SEEK ]   SNORD57 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)26792
GTEX Portal (Tissue expression)SNORD57
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD57
DMDM Disease mutations26792
Blocks (Seattle)SNORD57
Protein Interaction databases
BioGRIDSNORD57
STRING (EMBL)SNORD57
ZODIACSNORD57
Ontologies - Pathways
Huge Navigator SNORD57 [HugePedia]
snp3D : Map Gene to Disease26792
BioCentury BCIQSNORD57
ClinGenSNORD57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26792
Chemical/Pharm GKB GenePA34574
Clinical trialSNORD57
Miscellaneous
canSAR (ICR)SNORD57 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD57
EVEXSNORD57
GoPubMedSNORD57
iHOPSNORD57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:42:18 CET 2017

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