Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SNORD71 (small nucleolar RNA, C/D box 71)

Identity

Alias (NCBI)HBII-239
MIRN768
hsa-mir-768
HGNC (Hugo) SNORD71
HGNC Alias symbHBII-239
hsa-mir-768
HGNC Previous nameMIRN768
HGNC Previous namemicroRNA 768
LocusID (NCBI) 692111
Atlas_Id 55159
Location 16q22.2  [Link to chromosome band 16q22]
Location_base_pair Starts at 71758402 and ends at 71758487 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SNORD71   32732
Cards
Entrez_Gene (NCBI)SNORD71  692111  small nucleolar RNA, C/D box 71
AliasesHBII-239; MIRN768; hsa-mir-768
GeneCards (Weizmann)SNORD71
Ensembl hg19 (Hinxton)ENSG00000223224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223224 [Gene_View]  ENSG00000223224 [Sequence]  chr16:71758402-71758487 [Contig_View]  SNORD71 [Vega]
ICGC DataPortalENSG00000223224
TCGA cBioPortalSNORD71
AceView (NCBI)SNORD71
Genatlas (Paris)SNORD71
WikiGenes692111
SOURCE (Princeton)SNORD71
Genetics Home Reference (NIH)SNORD71
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD71  -     chr16:71758402-71758487 -  16q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD71  -     16q22.2   [Description]    (hg19-Feb_2009)
GoldenPathSNORD71 - 16q22.2 [CytoView hg19]  SNORD71 - 16q22.2 [CytoView hg38]
ImmunoBaseENSG00000223224
genome Data Viewer NCBISNORD71 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD71
Alternative Splicing GalleryENSG00000223224
Gene ExpressionSNORD71 [ NCBI-GEO ]   SNORD71 [ EBI - ARRAY_EXPRESS ]   SNORD71 [ SEEK ]   SNORD71 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD71 [ Firebrowse - Broad ]
GenevisibleExpression of SNORD71 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)692111
GTEX Portal (Tissue expression)SNORD71
Human Protein AtlasENSG00000223224-SNORD71 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD71
DMDM Disease mutations692111
Blocks (Seattle)SNORD71
Human Protein Atlas [tissue]ENSG00000223224-SNORD71 [tissue]
Protein Interaction databases
FunCoupENSG00000223224
BioGRIDSNORD71
STRING (EMBL)SNORD71
ZODIACSNORD71
Ontologies - Pathways
Huge Navigator SNORD71 [HugePedia]
snp3D : Map Gene to Disease692111
BioCentury BCIQSNORD71
ClinGenSNORD71
Clinical trials, drugs, therapy
Protein Interactions : CTD692111
Pharm GKB GenePA145007795
Clinical trialSNORD71
Miscellaneous
canSAR (ICR)SNORD71 (select the gene name)
HarmonizomeSNORD71
DataMed IndexSNORD71
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD71
EVEXSNORD71
GoPubMedSNORD71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:33:42 CEST 2020
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