Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNORD78 (small nucleolar RNA, C/D box 78)

Identity

Alias_symbol (synonym)U78
Other alias
HGNC (Hugo) SNORD78
LocusID (NCBI) 692198
Atlas_Id 73996
Location 1q25.1  [Link to chromosome band 1q25]
Location_base_pair Starts at 173865622 and ends at 173865686 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD78   32738
Cards
Entrez_Gene (NCBI)SNORD78  692198  small nucleolar RNA, C/D box 78
AliasesU78
GeneCards (Weizmann)SNORD78
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:173865622-173865686 [Contig_View]  SNORD78 [Vega]
TCGA cBioPortalSNORD78
AceView (NCBI)SNORD78
Genatlas (Paris)SNORD78
WikiGenes692198
SOURCE (Princeton)SNORD78
Genetics Home Reference (NIH)SNORD78
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD78  -     chr1:173865622-173865686 -  1q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD78  -     1q25.1   [Description]    (hg19-Feb_2009)
EnsemblSNORD78 - 1q25.1 [CytoView hg19]  SNORD78 - 1q25.1 [CytoView hg38]
Mapping of homologs : NCBISNORD78 [Mapview hg19]  SNORD78 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD78
Gene ExpressionSNORD78 [ NCBI-GEO ]   SNORD78 [ EBI - ARRAY_EXPRESS ]   SNORD78 [ SEEK ]   SNORD78 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD78 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)692198
GTEX Portal (Tissue expression)SNORD78
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD78
DMDM Disease mutations692198
Blocks (Seattle)SNORD78
Protein Interaction databases
BioGRIDSNORD78
STRING (EMBL)SNORD78
ZODIACSNORD78
Ontologies - Pathways
Huge Navigator SNORD78 [HugePedia]
snp3D : Map Gene to Disease692198
BioCentury BCIQSNORD78
ClinGenSNORD78
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD692198
Chemical/Pharm GKB GenePA145007773
Clinical trialSNORD78
Miscellaneous
canSAR (ICR)SNORD78 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD78
EVEXSNORD78
GoPubMedSNORD78
iHOPSNORD78
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:30:10 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.