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SNORD88B (small nucleolar RNA, C/D box 88B)

Identity

Alias_symbol (synonym)HBII-180B
Other alias
HGNC (Hugo) SNORD88B
LocusID (NCBI) 692203
Atlas_Id 74009
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50799029 and ends at 50799125 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD88B   32748
Cards
Entrez_Gene (NCBI)SNORD88B  692203  small nucleolar RNA, C/D box 88B
AliasesHBII-180B
GeneCards (Weizmann)SNORD88B
Ensembl hg19 (Hinxton)ENSG00000221381 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221381 [Gene_View]  chr19:50799029-50799125 [Contig_View]  SNORD88B [Vega]
ICGC DataPortalENSG00000221381
TCGA cBioPortalSNORD88B
AceView (NCBI)SNORD88B
Genatlas (Paris)SNORD88B
WikiGenes692203
SOURCE (Princeton)SNORD88B
Genetics Home Reference (NIH)SNORD88B
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD88B  -     chr19:50799029-50799125 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD88B  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblSNORD88B - 19q13.33 [CytoView hg19]  SNORD88B - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBISNORD88B [Mapview hg19]  SNORD88B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD88B
Alternative Splicing GalleryENSG00000221381
Gene ExpressionSNORD88B [ NCBI-GEO ]   SNORD88B [ EBI - ARRAY_EXPRESS ]   SNORD88B [ SEEK ]   SNORD88B [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD88B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)692203
GTEX Portal (Tissue expression)SNORD88B
Human Protein AtlasENSG00000221381-SNORD88B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD88B
DMDM Disease mutations692203
Blocks (Seattle)SNORD88B
Human Protein Atlas [tissue]ENSG00000221381-SNORD88B [tissue]
Protein Interaction databases
FunCoupENSG00000221381
BioGRIDSNORD88B
STRING (EMBL)SNORD88B
ZODIACSNORD88B
Ontologies - Pathways
Huge Navigator SNORD88B [HugePedia]
snp3D : Map Gene to Disease692203
BioCentury BCIQSNORD88B
ClinGenSNORD88B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD692203
Chemical/Pharm GKB GenePA145007779
Clinical trialSNORD88B
Miscellaneous
canSAR (ICR)SNORD88B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD88B
EVEXSNORD88B
GoPubMedSNORD88B
iHOPSNORD88B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:30:13 CET 2017

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