Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNORD99 (small nucleolar RNA, C/D box 99)

Identity

Alias_symbol (synonym)HBII-420
Other alias
HGNC (Hugo) SNORD99
LocusID (NCBI) 692212
Atlas_Id 74024
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 28578743 and ends at 28578822 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD99   32762
Cards
Entrez_Gene (NCBI)SNORD99  692212  small nucleolar RNA, C/D box 99
AliasesHBII-420
GeneCards (Weizmann)SNORD99
Ensembl hg19 (Hinxton)ENSG00000221539 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221539 [Gene_View]  chr1:28578743-28578822 [Contig_View]  SNORD99 [Vega]
ICGC DataPortalENSG00000221539
TCGA cBioPortalSNORD99
AceView (NCBI)SNORD99
Genatlas (Paris)SNORD99
WikiGenes692212
SOURCE (Princeton)SNORD99
Genetics Home Reference (NIH)SNORD99
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD99  -     chr1:28578743-28578822 -  1p35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD99  -     1p35.3   [Description]    (hg19-Feb_2009)
EnsemblSNORD99 - 1p35.3 [CytoView hg19]  SNORD99 - 1p35.3 [CytoView hg38]
Mapping of homologs : NCBISNORD99 [Mapview hg19]  SNORD99 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD99
Alternative Splicing GalleryENSG00000221539
Gene ExpressionSNORD99 [ NCBI-GEO ]   SNORD99 [ EBI - ARRAY_EXPRESS ]   SNORD99 [ SEEK ]   SNORD99 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD99 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)692212
GTEX Portal (Tissue expression)SNORD99
Human Protein AtlasENSG00000221539-SNORD99 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD99
DMDM Disease mutations692212
Blocks (Seattle)SNORD99
Human Protein Atlas [tissue]ENSG00000221539-SNORD99 [tissue]
Protein Interaction databases
FunCoupENSG00000221539
BioGRIDSNORD99
STRING (EMBL)SNORD99
ZODIACSNORD99
Ontologies - Pathways
Huge Navigator SNORD99 [HugePedia]
snp3D : Map Gene to Disease692212
BioCentury BCIQSNORD99
ClinGenSNORD99
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD692212
Chemical/Pharm GKB GenePA145007747
Clinical trialSNORD99
Miscellaneous
canSAR (ICR)SNORD99 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD99
EVEXSNORD99
GoPubMedSNORD99
iHOPSNORD99
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:30:17 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.