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SNPH (syntaphilin)

Identity

Alias_symbol (synonym)bA314N13.5
Other alias-
HGNC (Hugo) SNPH
LocusID (NCBI) 9751
Atlas_Id 56076
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 1266291 and ends at 1309327 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNPH (20p13) / CYTH1 (17q25.3)SNPH (20p13) / MAP1B (5q13.2)SNPH (20p13) / SNPH (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNPH   15931
Cards
Entrez_Gene (NCBI)SNPH  9751  syntaphilin
Aliases
GeneCards (Weizmann)SNPH
Ensembl hg19 (Hinxton)ENSG00000101298 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101298 [Gene_View]  chr20:1266291-1309327 [Contig_View]  SNPH [Vega]
ICGC DataPortalENSG00000101298
TCGA cBioPortalSNPH
AceView (NCBI)SNPH
Genatlas (Paris)SNPH
WikiGenes9751
SOURCE (Princeton)SNPH
Genetics Home Reference (NIH)SNPH
Genomic and cartography
GoldenPath hg38 (UCSC)SNPH  -     chr20:1266291-1309327 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNPH  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblSNPH - 20p13 [CytoView hg19]  SNPH - 20p13 [CytoView hg38]
Mapping of homologs : NCBISNPH [Mapview hg19]  SNPH [Mapview hg38]
OMIM604942   
Gene and transcription
Genbank (Entrez)AB002372 AF187733 BC035788 HQ447295 HY149980
RefSeq transcript (Entrez)NM_001318234 NM_014723
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNPH
Cluster EST : UnigeneHs.323833 [ NCBI ]
CGAP (NCI)Hs.323833
Alternative Splicing GalleryENSG00000101298
Gene ExpressionSNPH [ NCBI-GEO ]   SNPH [ EBI - ARRAY_EXPRESS ]   SNPH [ SEEK ]   SNPH [ MEM ]
Gene Expression Viewer (FireBrowse)SNPH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9751
GTEX Portal (Tissue expression)SNPH
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15079   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15079  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15079
Splice isoforms : SwissVarO15079
PhosPhoSitePlusO15079
Domains : Interpro (EBI)Syntaphilin    Syntaphilin/Syntabulin   
Domain families : Pfam (Sanger)Syntaphilin (PF15290)   
Domain families : Pfam (NCBI)pfam15290   
Conserved Domain (NCBI)SNPH
DMDM Disease mutations9751
Blocks (Seattle)SNPH
SuperfamilyO15079
Human Protein AtlasENSG00000101298
Peptide AtlasO15079
HPRD16081
IPIIPI00412414   IPI00006054   
Protein Interaction databases
DIP (DOE-UCLA)O15079
IntAct (EBI)O15079
FunCoupENSG00000101298
BioGRIDSNPH
STRING (EMBL)SNPH
ZODIACSNPH
Ontologies - Pathways
QuickGOO15079
Ontology : AmiGOcytoplasm  cytoplasmic microtubule  neurotransmitter secretion  brain development  integral component of membrane  synaptic vesicle docking  syntaxin-1 binding  cell junction  neuron differentiation  mitochondrial membrane  presynaptic membrane  neuron projection  neuronal cell body  
Ontology : EGO-EBIcytoplasm  cytoplasmic microtubule  neurotransmitter secretion  brain development  integral component of membrane  synaptic vesicle docking  syntaxin-1 binding  cell junction  neuron differentiation  mitochondrial membrane  presynaptic membrane  neuron projection  neuronal cell body  
NDEx NetworkSNPH
Atlas of Cancer Signalling NetworkSNPH
Wikipedia pathwaysSNPH
Orthology - Evolution
OrthoDB9751
GeneTree (enSembl)ENSG00000101298
Phylogenetic Trees/Animal Genes : TreeFamSNPH
HOVERGENO15079
HOGENOMO15079
Homologs : HomoloGeneSNPH
Homology/Alignments : Family Browser (UCSC)SNPH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNPH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNPH
dbVarSNPH
ClinVarSNPH
1000_GenomesSNPH 
Exome Variant ServerSNPH
ExAC (Exome Aggregation Consortium)SNPH (select the gene name)
Genetic variants : HAPMAP9751
Genomic Variants (DGV)SNPH [DGVbeta]
DECIPHERSNPH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNPH 
Mutations
ICGC Data PortalSNPH 
TCGA Data PortalSNPH 
Broad Tumor PortalSNPH
OASIS PortalSNPH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNPH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNPH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SNPH
DgiDB (Drug Gene Interaction Database)SNPH
DoCM (Curated mutations)SNPH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNPH (select a term)
intoGenSNPH
Cancer3DSNPH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604942   
Orphanet
MedgenSNPH
Genetic Testing Registry SNPH
NextProtO15079 [Medical]
TSGene9751
GENETestsSNPH
Target ValidationSNPH
Huge Navigator SNPH [HugePedia]
snp3D : Map Gene to Disease9751
BioCentury BCIQSNPH
ClinGenSNPH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9751
Chemical/Pharm GKB GenePA38053
Clinical trialSNPH
Miscellaneous
canSAR (ICR)SNPH (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNPH
EVEXSNPH
GoPubMedSNPH
iHOPSNPH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:32:18 CEST 2017

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