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SNPH (syntaphilin)

Identity

Alias (NCBI)-
HGNC (Hugo) SNPH
HGNC Alias symbbA314N13.5
LocusID (NCBI) 9751
Atlas_Id 56076
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 1266294 and ends at 1309327 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNPH (20p13)::CYTH1 (17q25.3)SNPH (20p13)::MAP1B (5q13.2)SNPH (20p13)::SNPH (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SNPH   15931
Cards
Entrez_Gene (NCBI)SNPH    syntaphilin
Aliases
GeneCards (Weizmann)SNPH
Ensembl hg19 (Hinxton)ENSG00000101298 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101298 [Gene_View]  ENSG00000101298 [Sequence]  chr20:1266294-1309327 [Contig_View]  SNPH [Vega]
ICGC DataPortalENSG00000101298
TCGA cBioPortalSNPH
AceView (NCBI)SNPH
Genatlas (Paris)SNPH
SOURCE (Princeton)SNPH
Genetics Home Reference (NIH)SNPH
Genomic and cartography
GoldenPath hg38 (UCSC)SNPH  -     chr20:1266294-1309327 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNPH  -     20p13   [Description]    (hg19-Feb_2009)
GoldenPathSNPH - 20p13 [CytoView hg19]  SNPH - 20p13 [CytoView hg38]
ImmunoBaseENSG00000101298
Genome Data Viewer NCBISNPH [Mapview hg19]  
OMIM604942   
Gene and transcription
Genbank (Entrez)AB002372 AF187733 BC035788 HY149980
RefSeq transcript (Entrez)NM_001318234 NM_014723
Consensus coding sequences : CCDS (NCBI)SNPH
Gene ExpressionSNPH [ NCBI-GEO ]   SNPH [ EBI - ARRAY_EXPRESS ]   SNPH [ SEEK ]   SNPH [ MEM ]
Gene Expression Viewer (FireBrowse)SNPH [ Firebrowse - Broad ]
GenevisibleExpression of SNPH in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9751
GTEX Portal (Tissue expression)SNPH
Human Protein AtlasENSG00000101298-SNPH [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15079   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15079  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15079
PhosPhoSitePlusO15079
Domains : Interpro (EBI)Syntaphilin    Syntaphilin/Syntabulin   
Domain families : Pfam (Sanger)Syntaphilin (PF15290)   
Domain families : Pfam (NCBI)pfam15290   
Conserved Domain (NCBI)SNPH
SuperfamilyO15079
AlphaFold pdb e-kbO15079   
Human Protein Atlas [tissue]ENSG00000101298-SNPH [tissue]
HPRD16081
Protein Interaction databases
DIP (DOE-UCLA)O15079
IntAct (EBI)O15079
BioGRIDSNPH
STRING (EMBL)SNPH
ZODIACSNPH
Ontologies - Pathways
QuickGOO15079
Ontology : AmiGOprotein binding  cytoplasm  mitochondrion  cytoplasmic microtubule  cytoplasmic microtubule  neurotransmitter secretion  brain development  microtubule binding  integral component of membrane  synaptic vesicle docking  syntaxin-1 binding  neuron differentiation  mitochondrial membrane  presynaptic membrane  neuron projection  neuronal cell body  
Ontology : EGO-EBIprotein binding  cytoplasm  mitochondrion  cytoplasmic microtubule  cytoplasmic microtubule  neurotransmitter secretion  brain development  microtubule binding  integral component of membrane  synaptic vesicle docking  syntaxin-1 binding  neuron differentiation  mitochondrial membrane  presynaptic membrane  neuron projection  neuronal cell body  
NDEx NetworkSNPH
Atlas of Cancer Signalling NetworkSNPH
Wikipedia pathwaysSNPH
Orthology - Evolution
OrthoDB9751
GeneTree (enSembl)ENSG00000101298
Phylogenetic Trees/Animal Genes : TreeFamSNPH
Homologs : HomoloGeneSNPH
Homology/Alignments : Family Browser (UCSC)SNPH
Gene fusions - Rearrangements
Fusion : QuiverSNPH
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNPH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNPH
dbVarSNPH
ClinVarSNPH
MonarchSNPH
1000_GenomesSNPH 
Exome Variant ServerSNPH
GNOMAD BrowserENSG00000101298
Varsome BrowserSNPH
ACMGSNPH variants
VarityO15079
Genomic Variants (DGV)SNPH [DGVbeta]
DECIPHERSNPH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNPH 
Mutations
ICGC Data PortalSNPH 
TCGA Data PortalSNPH 
Broad Tumor PortalSNPH
OASIS PortalSNPH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNPH  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSNPH
Mutations and Diseases : HGMDSNPH
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSNPH
DgiDB (Drug Gene Interaction Database)SNPH
DoCM (Curated mutations)SNPH
CIViC (Clinical Interpretations of Variants in Cancer)SNPH
Cancer3DSNPH
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604942   
Orphanet
DisGeNETSNPH
MedgenSNPH
Genetic Testing Registry SNPH
NextProtO15079 [Medical]
GENETestsSNPH
Target ValidationSNPH
Huge Navigator SNPH [HugePedia]
ClinGenSNPH
Clinical trials, drugs, therapy
MyCancerGenomeSNPH
Protein Interactions : CTDSNPH
Pharm GKB GenePA38053
PharosO15079
Clinical trialSNPH
Miscellaneous
canSAR (ICR)SNPH
HarmonizomeSNPH
ARCHS4SNPH
DataMed IndexSNPH
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSNPH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:34:49 CET 2022

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