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SNRK (SNF related kinase)

Identity

Alias_symbol (synonym)FLJ20224
HSNFRK
KIAA0096
Other alias
HGNC (Hugo) SNRK
LocusID (NCBI) 54861
Atlas_Id 43498
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 43328004 and ends at 43392634 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
THAP3 (1p36.31) / SNRK (3p22.1)TM9SF3 (10q24.1) / SNRK (3p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNRK   30598
Cards
Entrez_Gene (NCBI)SNRK  54861  SNF related kinase
AliasesHSNFRK
GeneCards (Weizmann)SNRK
Ensembl hg19 (Hinxton)ENSG00000163788 [Gene_View]  chr3:43328004-43392634 [Contig_View]  SNRK [Vega]
Ensembl hg38 (Hinxton)ENSG00000163788 [Gene_View]  chr3:43328004-43392634 [Contig_View]  SNRK [Vega]
ICGC DataPortalENSG00000163788
TCGA cBioPortalSNRK
AceView (NCBI)SNRK
Genatlas (Paris)SNRK
WikiGenes54861
SOURCE (Princeton)SNRK
Genetics Home Reference (NIH)SNRK
Genomic and cartography
GoldenPath hg19 (UCSC)SNRK  -     chr3:43328004-43392634 +  3p22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNRK  -     3p22.1   [Description]    (hg38-Dec_2013)
EnsemblSNRK - 3p22.1 [CytoView hg19]  SNRK - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBISNRK [Mapview hg19]  SNRK [Mapview hg38]
OMIM612760   
Gene and transcription
Genbank (Entrez)AK000231 AK025449 AK026013 AK291360 AK295187
RefSeq transcript (Entrez)NM_001100594 NM_017719
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)SNRK
Cluster EST : UnigeneHs.476052 [ NCBI ]
CGAP (NCI)Hs.476052
Alternative Splicing GalleryENSG00000163788
Gene ExpressionSNRK [ NCBI-GEO ]   SNRK [ EBI - ARRAY_EXPRESS ]   SNRK [ SEEK ]   SNRK [ MEM ]
Gene Expression Viewer (FireBrowse)SNRK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54861
GTEX Portal (Tissue expression)SNRK
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRH2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRH2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRH2
Splice isoforms : SwissVarQ9NRH2
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
PhosPhoSitePlusQ9NRH2
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)    UBA (PS50030)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_dual-sp_kinase    Ser/Thr_kinase_AS    UBA   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)SNRK
DMDM Disease mutations54861
Blocks (Seattle)SNRK
SuperfamilyQ9NRH2
Human Protein AtlasENSG00000163788
Peptide AtlasQ9NRH2
HPRD18082
IPIIPI00470811   IPI00718873   IPI00924505   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRH2
IntAct (EBI)Q9NRH2
FunCoupENSG00000163788
BioGRIDSNRK
STRING (EMBL)SNRK
ZODIACSNRK
Ontologies - Pathways
QuickGOQ9NRH2
Ontology : AmiGOmagnesium ion binding  protein serine/threonine kinase activity  ATP binding  nucleus  nucleus  cytoplasm  protein phosphorylation  myeloid cell differentiation  intracellular signal transduction  
Ontology : EGO-EBImagnesium ion binding  protein serine/threonine kinase activity  ATP binding  nucleus  nucleus  cytoplasm  protein phosphorylation  myeloid cell differentiation  intracellular signal transduction  
NDEx NetworkSNRK
Atlas of Cancer Signalling NetworkSNRK
Wikipedia pathwaysSNRK
Orthology - Evolution
OrthoDB54861
GeneTree (enSembl)ENSG00000163788
Phylogenetic Trees/Animal Genes : TreeFamSNRK
HOVERGENQ9NRH2
HOGENOMQ9NRH2
Homologs : HomoloGeneSNRK
Homology/Alignments : Family Browser (UCSC)SNRK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRK
dbVarSNRK
ClinVarSNRK
1000_GenomesSNRK 
Exome Variant ServerSNRK
ExAC (Exome Aggregation Consortium)SNRK (select the gene name)
Genetic variants : HAPMAP54861
Genomic Variants (DGV)SNRK [DGVbeta]
DECIPHER (Syndromes)3:43328004-43392634  ENSG00000163788
CONAN: Copy Number AnalysisSNRK 
Mutations
ICGC Data PortalSNRK 
TCGA Data PortalSNRK 
Broad Tumor PortalSNRK
OASIS PortalSNRK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRK  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRK
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRK
DgiDB (Drug Gene Interaction Database)SNRK
DoCM (Curated mutations)SNRK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRK (select a term)
intoGenSNRK
Cancer3DSNRK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612760   
Orphanet
MedgenSNRK
Genetic Testing Registry SNRK
NextProtQ9NRH2 [Medical]
TSGene54861
GENETestsSNRK
Huge Navigator SNRK [HugePedia]
snp3D : Map Gene to Disease54861
BioCentury BCIQSNRK
ClinGenSNRK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54861
Chemical/Pharm GKB GenePA142670894
Clinical trialSNRK
Miscellaneous
canSAR (ICR)SNRK (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRK
EVEXSNRK
GoPubMedSNRK
iHOPSNRK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:18 CEST 2017

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