Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNRNP25 (small nuclear ribonucleoprotein U11/U12 subunit 25)

Identity

Alias_namesC16orf33
chromosome 16 open reading frame 33
small nuclear ribonucleoprotein 25kDa (U11/U12)
small nuclear ribonucleoprotein, U11/U12 25kDa subunit
Alias_symbol (synonym)U11/U12-25K
Other alias
HGNC (Hugo) SNRNP25
LocusID (NCBI) 79622
Atlas_Id 55522
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 103829 and ends at 107669 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HNRNPU (1q44) / SNRNP25 (16p13.3)LRP1 (12q13.3) / SNRNP25 (16p13.3)MPG (16p13.3) / SNRNP25 (16p13.3)
SNRNP25 (16p13.3) / COPS4 (4q21.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNRNP25   14161
Cards
Entrez_Gene (NCBI)SNRNP25  79622  small nuclear ribonucleoprotein U11/U12 subunit 25
AliasesC16orf33
GeneCards (Weizmann)SNRNP25
Ensembl hg19 (Hinxton)ENSG00000161981 [Gene_View]  chr16:103829-107669 [Contig_View]  SNRNP25 [Vega]
Ensembl hg38 (Hinxton)ENSG00000161981 [Gene_View]  chr16:103829-107669 [Contig_View]  SNRNP25 [Vega]
ICGC DataPortalENSG00000161981
TCGA cBioPortalSNRNP25
AceView (NCBI)SNRNP25
Genatlas (Paris)SNRNP25
WikiGenes79622
SOURCE (Princeton)SNRNP25
Genetics Home Reference (NIH)SNRNP25
Genomic and cartography
GoldenPath hg19 (UCSC)SNRNP25  -     chr16:103829-107669 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNRNP25  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblSNRNP25 - 16p13.3 [CytoView hg19]  SNRNP25 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBISNRNP25 [Mapview hg19]  SNRNP25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI820975 AK026593 BC001381 BC009179 BK005201
RefSeq transcript (Entrez)NM_024571
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_017004 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)SNRNP25
Cluster EST : UnigeneHs.15277 [ NCBI ]
CGAP (NCI)Hs.15277
Alternative Splicing GalleryENSG00000161981
Gene ExpressionSNRNP25 [ NCBI-GEO ]   SNRNP25 [ EBI - ARRAY_EXPRESS ]   SNRNP25 [ SEEK ]   SNRNP25 [ MEM ]
Gene Expression Viewer (FireBrowse)SNRNP25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79622
GTEX Portal (Tissue expression)SNRNP25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BV90   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BV90  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BV90
Splice isoforms : SwissVarQ9BV90
PhosPhoSitePlusQ9BV90
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNRNP25
DMDM Disease mutations79622
Blocks (Seattle)SNRNP25
SuperfamilyQ9BV90
Human Protein AtlasENSG00000161981
Peptide AtlasQ9BV90
HPRD12673
IPIIPI00383271   IPI00550775   IPI00879404   IPI00879549   
Protein Interaction databases
DIP (DOE-UCLA)Q9BV90
IntAct (EBI)Q9BV90
FunCoupENSG00000161981
BioGRIDSNRNP25
STRING (EMBL)SNRNP25
ZODIACSNRNP25
Ontologies - Pathways
QuickGOQ9BV90
Ontology : AmiGOmRNA splicing, via spliceosome  protein binding  nucleus  nucleoplasm  nucleoplasm  U12-type spliceosomal complex  cytoplasm  RNA splicing  intercellular bridge  
Ontology : EGO-EBImRNA splicing, via spliceosome  protein binding  nucleus  nucleoplasm  nucleoplasm  U12-type spliceosomal complex  cytoplasm  RNA splicing  intercellular bridge  
NDEx NetworkSNRNP25
Atlas of Cancer Signalling NetworkSNRNP25
Wikipedia pathwaysSNRNP25
Orthology - Evolution
OrthoDB79622
GeneTree (enSembl)ENSG00000161981
Phylogenetic Trees/Animal Genes : TreeFamSNRNP25
HOVERGENQ9BV90
HOGENOMQ9BV90
Homologs : HomoloGeneSNRNP25
Homology/Alignments : Family Browser (UCSC)SNRNP25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRNP25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRNP25
dbVarSNRNP25
ClinVarSNRNP25
1000_GenomesSNRNP25 
Exome Variant ServerSNRNP25
ExAC (Exome Aggregation Consortium)SNRNP25 (select the gene name)
Genetic variants : HAPMAP79622
Genomic Variants (DGV)SNRNP25 [DGVbeta]
DECIPHER (Syndromes)16:103829-107669  ENSG00000161981
CONAN: Copy Number AnalysisSNRNP25 
Mutations
ICGC Data PortalSNRNP25 
TCGA Data PortalSNRNP25 
Broad Tumor PortalSNRNP25
OASIS PortalSNRNP25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRNP25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRNP25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRNP25
DgiDB (Drug Gene Interaction Database)SNRNP25
DoCM (Curated mutations)SNRNP25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRNP25 (select a term)
intoGenSNRNP25
Cancer3DSNRNP25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNRNP25
Genetic Testing Registry SNRNP25
NextProtQ9BV90 [Medical]
TSGene79622
GENETestsSNRNP25
Huge Navigator SNRNP25 [HugePedia]
snp3D : Map Gene to Disease79622
BioCentury BCIQSNRNP25
ClinGenSNRNP25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79622
Chemical/Pharm GKB GenePA164726099
Clinical trialSNRNP25
Miscellaneous
canSAR (ICR)SNRNP25 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRNP25
EVEXSNRNP25
GoPubMedSNRNP25
iHOPSNRNP25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:18 CEST 2017

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