Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNRNP27 (small nuclear ribonucleoprotein 27kDa (U4/U6.U5))

Identity

Alias_namessmall nuclear ribonucleoprotein 27kDa (U4/U6.U5)
small nuclear ribonucleoprotein, U4/U6.U5 27kDa subunit
Alias_symbol (synonym)RY1
U4/U6.U5-27K
Other alias27K
HGNC (Hugo) SNRNP27
LocusID (NCBI) 11017
Atlas_Id 74029
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 70121075 and ends at 70132368 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TUBA1A (12q13.12) / SNRNP27 (2p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNRNP27   30240
Cards
Entrez_Gene (NCBI)SNRNP27  11017  small nuclear ribonucleoprotein 27kDa (U4/U6.U5)
Aliases27K; RY1
GeneCards (Weizmann)SNRNP27
Ensembl hg19 (Hinxton) [Gene_View]  chr2:70121075-70132368 [Contig_View]  SNRNP27 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:70121075-70132368 [Contig_View]  SNRNP27 [Vega]
TCGA cBioPortalSNRNP27
AceView (NCBI)SNRNP27
Genatlas (Paris)SNRNP27
WikiGenes11017
SOURCE (Princeton)SNRNP27
Genetics Home Reference (NIH)SNRNP27
Genomic and cartography
GoldenPath hg19 (UCSC)SNRNP27  -     chr2:70121075-70132368 +  2p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNRNP27  -     2p13.3   [Description]    (hg38-Dec_2013)
EnsemblSNRNP27 - 2p13.3 [CytoView hg19]  SNRNP27 - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBISNRNP27 [Mapview hg19]  SNRNP27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK291128 AK312041 AW452063 BC017890 BU171817
RefSeq transcript (Entrez)NM_006857
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)SNRNP27
Cluster EST : UnigeneHs.54649 [ NCBI ]
CGAP (NCI)Hs.54649
Gene ExpressionSNRNP27 [ NCBI-GEO ]   SNRNP27 [ EBI - ARRAY_EXPRESS ]   SNRNP27 [ SEEK ]   SNRNP27 [ MEM ]
Gene Expression Viewer (FireBrowse)SNRNP27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11017
GTEX Portal (Tissue expression)SNRNP27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVK2
Splice isoforms : SwissVarQ8WVK2
PhosPhoSitePlusQ8WVK2
Domains : Interpro (EBI)DUF1777   
Domain families : Pfam (Sanger)DUF1777 (PF08648)   
Domain families : Pfam (NCBI)pfam08648   
Conserved Domain (NCBI)SNRNP27
DMDM Disease mutations11017
Blocks (Seattle)SNRNP27
SuperfamilyQ8WVK2
Peptide AtlasQ8WVK2
HPRD15288
IPIIPI00017289   IPI00916970   IPI00983640   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVK2
IntAct (EBI)Q8WVK2
BioGRIDSNRNP27
STRING (EMBL)SNRNP27
ZODIACSNRNP27
Ontologies - Pathways
QuickGOQ8WVK2
Ontology : AmiGOnucleic acid binding  protein binding  cellular_component  mRNA processing  biological_process  RNA splicing  precatalytic spliceosome  
Ontology : EGO-EBInucleic acid binding  protein binding  cellular_component  mRNA processing  biological_process  RNA splicing  precatalytic spliceosome  
Pathways : KEGGSpliceosome   
NDEx NetworkSNRNP27
Atlas of Cancer Signalling NetworkSNRNP27
Wikipedia pathwaysSNRNP27
Orthology - Evolution
OrthoDB11017
Phylogenetic Trees/Animal Genes : TreeFamSNRNP27
HOVERGENQ8WVK2
HOGENOMQ8WVK2
Homologs : HomoloGeneSNRNP27
Homology/Alignments : Family Browser (UCSC)SNRNP27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRNP27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRNP27
dbVarSNRNP27
ClinVarSNRNP27
1000_GenomesSNRNP27 
Exome Variant ServerSNRNP27
ExAC (Exome Aggregation Consortium)SNRNP27 (select the gene name)
Genetic variants : HAPMAP11017
Genomic Variants (DGV)SNRNP27 [DGVbeta]
DECIPHER (Syndromes)2:70121075-70132368  
CONAN: Copy Number AnalysisSNRNP27 
Mutations
ICGC Data PortalSNRNP27 
TCGA Data PortalSNRNP27 
Broad Tumor PortalSNRNP27
OASIS PortalSNRNP27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRNP27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRNP27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRNP27
DgiDB (Drug Gene Interaction Database)SNRNP27
DoCM (Curated mutations)SNRNP27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRNP27 (select a term)
intoGenSNRNP27
Cancer3DSNRNP27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNRNP27
Genetic Testing Registry SNRNP27
NextProtQ8WVK2 [Medical]
TSGene11017
GENETestsSNRNP27
Huge Navigator SNRNP27 [HugePedia]
snp3D : Map Gene to Disease11017
BioCentury BCIQSNRNP27
ClinGenSNRNP27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11017
Chemical/Pharm GKB GenePA164726114
Clinical trialSNRNP27
Miscellaneous
canSAR (ICR)SNRNP27 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRNP27
EVEXSNRNP27
GoPubMedSNRNP27
iHOPSNRNP27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:46:01 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.