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SNRNP35 (small nuclear ribonucleoprotein U11/U12 subunit 35)

Identity

Alias_namessmall nuclear ribonucleoprotein 35kDa (U11/U12)
small nuclear ribonucleoprotein U11/U12 35kDa subunit
Alias_symbol (synonym)U1SNRNPBP
Other aliasHM-1
HGNC (Hugo) SNRNP35
LocusID (NCBI) 11066
Atlas_Id 56145
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 123458104 and ends at 123466394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PSPH (7p11.2) / SNRNP35 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNRNP35   30852
Cards
Entrez_Gene (NCBI)SNRNP35  11066  small nuclear ribonucleoprotein U11/U12 subunit 35
AliasesHM-1; U1SNRNPBP
GeneCards (Weizmann)SNRNP35
Ensembl hg19 (Hinxton)ENSG00000184209 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184209 [Gene_View]  chr12:123458104-123466394 [Contig_View]  SNRNP35 [Vega]
ICGC DataPortalENSG00000184209
TCGA cBioPortalSNRNP35
AceView (NCBI)SNRNP35
Genatlas (Paris)SNRNP35
WikiGenes11066
SOURCE (Princeton)SNRNP35
Genetics Home Reference (NIH)SNRNP35
Genomic and cartography
GoldenPath hg38 (UCSC)SNRNP35  -     chr12:123458104-123466394 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNRNP35  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblSNRNP35 - 12q24.31 [CytoView hg19]  SNRNP35 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBISNRNP35 [Mapview hg19]  SNRNP35 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK290127 BC009622 BC028485 BC047678 BC054034
RefSeq transcript (Entrez)NM_007020 NM_022717 NM_180699 NM_180703
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNRNP35
Cluster EST : UnigeneHs.632738 [ NCBI ]
CGAP (NCI)Hs.632738
Alternative Splicing GalleryENSG00000184209
Gene ExpressionSNRNP35 [ NCBI-GEO ]   SNRNP35 [ EBI - ARRAY_EXPRESS ]   SNRNP35 [ SEEK ]   SNRNP35 [ MEM ]
Gene Expression Viewer (FireBrowse)SNRNP35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11066
GTEX Portal (Tissue expression)SNRNP35
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16560   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16560  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16560
Splice isoforms : SwissVarQ16560
PhosPhoSitePlusQ16560
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom    snRNP35_RRM   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)SNRNP35
DMDM Disease mutations11066
Blocks (Seattle)SNRNP35
SuperfamilyQ16560
Human Protein AtlasENSG00000184209
Peptide AtlasQ16560
HPRD15595
IPIIPI00007576   IPI00377030   
Protein Interaction databases
DIP (DOE-UCLA)Q16560
IntAct (EBI)Q16560
FunCoupENSG00000184209
BioGRIDSNRNP35
STRING (EMBL)SNRNP35
ZODIACSNRNP35
Ontologies - Pathways
QuickGOQ16560
Ontology : AmiGOcommitment complex  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA binding  nucleus  nucleoplasm  U12-type spliceosomal complex  nucleolus  RNA splicing  snRNA binding  precatalytic spliceosome  
Ontology : EGO-EBIcommitment complex  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA binding  nucleus  nucleoplasm  U12-type spliceosomal complex  nucleolus  RNA splicing  snRNA binding  precatalytic spliceosome  
NDEx NetworkSNRNP35
Atlas of Cancer Signalling NetworkSNRNP35
Wikipedia pathwaysSNRNP35
Orthology - Evolution
OrthoDB11066
GeneTree (enSembl)ENSG00000184209
Phylogenetic Trees/Animal Genes : TreeFamSNRNP35
HOVERGENQ16560
HOGENOMQ16560
Homologs : HomoloGeneSNRNP35
Homology/Alignments : Family Browser (UCSC)SNRNP35
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRNP35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRNP35
dbVarSNRNP35
ClinVarSNRNP35
1000_GenomesSNRNP35 
Exome Variant ServerSNRNP35
ExAC (Exome Aggregation Consortium)SNRNP35 (select the gene name)
Genetic variants : HAPMAP11066
Genomic Variants (DGV)SNRNP35 [DGVbeta]
DECIPHERSNRNP35 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNRNP35 
Mutations
ICGC Data PortalSNRNP35 
TCGA Data PortalSNRNP35 
Broad Tumor PortalSNRNP35
OASIS PortalSNRNP35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRNP35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRNP35
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRNP35
DgiDB (Drug Gene Interaction Database)SNRNP35
DoCM (Curated mutations)SNRNP35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRNP35 (select a term)
intoGenSNRNP35
Cancer3DSNRNP35(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNRNP35
Genetic Testing Registry SNRNP35
NextProtQ16560 [Medical]
TSGene11066
GENETestsSNRNP35
Huge Navigator SNRNP35 [HugePedia]
snp3D : Map Gene to Disease11066
BioCentury BCIQSNRNP35
ClinGenSNRNP35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11066
Chemical/Pharm GKB GenePA164726115
Clinical trialSNRNP35
Miscellaneous
canSAR (ICR)SNRNP35 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRNP35
EVEXSNRNP35
GoPubMedSNRNP35
iHOPSNRNP35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:38:24 CEST 2017

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