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SNRPA (small nuclear ribonucleoprotein polypeptide A)

Identity

Alias_symbol (synonym)U1A
U1-A
Mud1
Other alias
HGNC (Hugo) SNRPA
LocusID (NCBI) 6626
Atlas_Id 56352
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 40750854 and ends at 40765392 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CREB3 (9p13.3) / SNRPA (19q13.2)SNRPA (19q13.2) / C19orf54 (19q13.2)SNRPA (19q13.2) / EIF3I (1p35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNRPA   11151
Cards
Entrez_Gene (NCBI)SNRPA  6626  small nuclear ribonucleoprotein polypeptide A
AliasesMud1; U1-A; U1A
GeneCards (Weizmann)SNRPA
Ensembl hg19 (Hinxton)ENSG00000077312 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000077312 [Gene_View]  chr19:40750854-40765392 [Contig_View]  SNRPA [Vega]
ICGC DataPortalENSG00000077312
TCGA cBioPortalSNRPA
AceView (NCBI)SNRPA
Genatlas (Paris)SNRPA
WikiGenes6626
SOURCE (Princeton)SNRPA
Genetics Home Reference (NIH)SNRPA
Genomic and cartography
GoldenPath hg38 (UCSC)SNRPA  -     chr19:40750854-40765392 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNRPA  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblSNRPA - 19q13.2 [CytoView hg19]  SNRPA - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBISNRPA [Mapview hg19]  SNRPA [Mapview hg38]
OMIM182285   
Gene and transcription
Genbank (Entrez)AK293140 AK313182 BC000405 BC008290 BQ002918
RefSeq transcript (Entrez)NM_004596
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNRPA
Cluster EST : UnigeneHs.466775 [ NCBI ]
CGAP (NCI)Hs.466775
Alternative Splicing GalleryENSG00000077312
Gene ExpressionSNRPA [ NCBI-GEO ]   SNRPA [ EBI - ARRAY_EXPRESS ]   SNRPA [ SEEK ]   SNRPA [ MEM ]
Gene Expression Viewer (FireBrowse)SNRPA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6626
GTEX Portal (Tissue expression)SNRPA
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09012   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09012  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09012
Splice isoforms : SwissVarP09012
PhosPhoSitePlusP09012
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)SNRPA
DMDM Disease mutations6626
Blocks (Seattle)SNRPA
PDB (SRS)###############################################################################################################################################################################################################################################################   
PDB (PDBSum)###############################################################################################################################################################################################################################################################   
PDB (IMB)###############################################################################################################################################################################################################################################################   
PDB (RSDB)###############################################################################################################################################################################################################################################################   
Structural Biology KnowledgeBase###############################################################################################################################################################################################################################################################   
SCOP (Structural Classification of Proteins)###############################################################################################################################################################################################################################################################   
CATH (Classification of proteins structures)###############################################################################################################################################################################################################################################################   
SuperfamilyP09012
Human Protein AtlasENSG00000077312
Peptide AtlasP09012
HPRD01658
IPIIPI00012382   IPI00909847   
Protein Interaction databases
DIP (DOE-UCLA)P09012
IntAct (EBI)P09012
FunCoupENSG00000077312
BioGRIDSNRPA
STRING (EMBL)SNRPA
ZODIACSNRPA
Ontologies - Pathways
QuickGOP09012
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  U1 snRNP  U1 snRNA binding  snRNA stem-loop binding  identical protein binding  regulation of mRNA polyadenylation  U1 snRNP binding  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  U1 snRNP  U1 snRNA binding  snRNA stem-loop binding  identical protein binding  regulation of mRNA polyadenylation  U1 snRNP binding  
Pathways : BIOCARTASpliceosomal Assembly [Genes]   
Pathways : KEGGSpliceosome   
NDEx NetworkSNRPA
Atlas of Cancer Signalling NetworkSNRPA
Wikipedia pathwaysSNRPA
Orthology - Evolution
OrthoDB6626
GeneTree (enSembl)ENSG00000077312
Phylogenetic Trees/Animal Genes : TreeFamSNRPA
HOVERGENP09012
HOGENOMP09012
Homologs : HomoloGeneSNRPA
Homology/Alignments : Family Browser (UCSC)SNRPA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRPA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRPA
dbVarSNRPA
ClinVarSNRPA
1000_GenomesSNRPA 
Exome Variant ServerSNRPA
ExAC (Exome Aggregation Consortium)SNRPA (select the gene name)
Genetic variants : HAPMAP6626
Genomic Variants (DGV)SNRPA [DGVbeta]
DECIPHERSNRPA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNRPA 
Mutations
ICGC Data PortalSNRPA 
TCGA Data PortalSNRPA 
Broad Tumor PortalSNRPA
OASIS PortalSNRPA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRPA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRPA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRPA
DgiDB (Drug Gene Interaction Database)SNRPA
DoCM (Curated mutations)SNRPA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRPA (select a term)
intoGenSNRPA
Cancer3DSNRPA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182285   
Orphanet
MedgenSNRPA
Genetic Testing Registry SNRPA
NextProtP09012 [Medical]
TSGene6626
GENETestsSNRPA
Target ValidationSNRPA
Huge Navigator SNRPA [HugePedia]
snp3D : Map Gene to Disease6626
BioCentury BCIQSNRPA
ClinGenSNRPA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6626
Chemical/Pharm GKB GenePA35993
Clinical trialSNRPA
Miscellaneous
canSAR (ICR)SNRPA (select the gene name)
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRPA
EVEXSNRPA
GoPubMedSNRPA
iHOPSNRPA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:15:16 CEST 2017

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