Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNRPA (small nuclear ribonucleoprotein polypeptide A)

Identity

Alias_symbol (synonym)U1A
U1-A
Mud1
Other alias
HGNC (Hugo) SNRPA
LocusID (NCBI) 6626
Atlas_Id 56352
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 40750854 and ends at 40765392 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CREB3 (9p13.3) / SNRPA (19q13.2)SNRPA (19q13.2) / C19orf54 (19q13.2)SNRPA (19q13.2) / EIF3I (1p35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  SNRPA/C19orf54 (19q13)


External links

Nomenclature
HGNC (Hugo)SNRPA   11151
Cards
Entrez_Gene (NCBI)SNRPA  6626  small nuclear ribonucleoprotein polypeptide A
AliasesMud1; U1-A; U1A
GeneCards (Weizmann)SNRPA
Ensembl hg19 (Hinxton)ENSG00000077312 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000077312 [Gene_View]  ENSG00000077312 [Sequence]  chr19:40750854-40765392 [Contig_View]  SNRPA [Vega]
ICGC DataPortalENSG00000077312
TCGA cBioPortalSNRPA
AceView (NCBI)SNRPA
Genatlas (Paris)SNRPA
WikiGenes6626
SOURCE (Princeton)SNRPA
Genetics Home Reference (NIH)SNRPA
Genomic and cartography
GoldenPath hg38 (UCSC)SNRPA  -     chr19:40750854-40765392 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNRPA  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblSNRPA - 19q13.2 [CytoView hg19]  SNRPA - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBISNRPA [Mapview hg19]  SNRPA [Mapview hg38]
OMIM182285   
Gene and transcription
Genbank (Entrez)AK293140 AK313182 BC000405 BC008290 BQ002918
RefSeq transcript (Entrez)NM_004596
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNRPA
Cluster EST : UnigeneHs.466775 [ NCBI ]
CGAP (NCI)Hs.466775
Alternative Splicing GalleryENSG00000077312
Gene ExpressionSNRPA [ NCBI-GEO ]   SNRPA [ EBI - ARRAY_EXPRESS ]   SNRPA [ SEEK ]   SNRPA [ MEM ]
Gene Expression Viewer (FireBrowse)SNRPA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6626
GTEX Portal (Tissue expression)SNRPA
Human Protein AtlasENSG00000077312-SNRPA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09012   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09012  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09012
Splice isoforms : SwissVarP09012
PhosPhoSitePlusP09012
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom    U1A_RRM1    U1A_RRM2   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)SNRPA
DMDM Disease mutations6626
Blocks (Seattle)SNRPA
PDB (SRS)1AUD    1DRZ    1DZ5    1FHT    1M5K    1M5O    1M5P    1M5V    1NU4    1OIA    1SJ3    1SJ4    1SJF    1U6B    1URN    1VBX    1VBY    1VBZ    1VC0    1VC5    1VC6    1ZZN    2A3J    2NZ4    2OIH    2OJ3    2U1A    3BO2    3BO3    3BO4    3CUL    3CUN    3EGZ    3G8S    3G8T    3G96    3G9C    3HHN    3IIN    3IRW    3IWN    3K0J    3L3C    3MUM    3MUR    3MUT    3MUV    3MXH    3P49    3PGW    3R1H    3R1L    3UCU    3UCZ    3UD3    3UD4    3UTR    4C4W    4PR6    4PRF    4W90    4W92    4YB1    5DDO    5DDP    5DDQ    5DDR    5FJ4   
PDB (PDBSum)1AUD    1DRZ    1DZ5    1FHT    1M5K    1M5O    1M5P    1M5V    1NU4    1OIA    1SJ3    1SJ4    1SJF    1U6B    1URN    1VBX    1VBY    1VBZ    1VC0    1VC5    1VC6    1ZZN    2A3J    2NZ4    2OIH    2OJ3    2U1A    3BO2    3BO3    3BO4    3CUL    3CUN    3EGZ    3G8S    3G8T    3G96    3G9C    3HHN    3IIN    3IRW    3IWN    3K0J    3L3C    3MUM    3MUR    3MUT    3MUV    3MXH    3P49    3PGW    3R1H    3R1L    3UCU    3UCZ    3UD3    3UD4    3UTR    4C4W    4PR6    4PRF    4W90    4W92    4YB1    5DDO    5DDP    5DDQ    5DDR    5FJ4   
PDB (IMB)1AUD    1DRZ    1DZ5    1FHT    1M5K    1M5O    1M5P    1M5V    1NU4    1OIA    1SJ3    1SJ4    1SJF    1U6B    1URN    1VBX    1VBY    1VBZ    1VC0    1VC5    1VC6    1ZZN    2A3J    2NZ4    2OIH    2OJ3    2U1A    3BO2    3BO3    3BO4    3CUL    3CUN    3EGZ    3G8S    3G8T    3G96    3G9C    3HHN    3IIN    3IRW    3IWN    3K0J    3L3C    3MUM    3MUR    3MUT    3MUV    3MXH    3P49    3PGW    3R1H    3R1L    3UCU    3UCZ    3UD3    3UD4    3UTR    4C4W    4PR6    4PRF    4W90    4W92    4YB1    5DDO    5DDP    5DDQ    5DDR    5FJ4   
PDB (RSDB)1AUD    1DRZ    1DZ5    1FHT    1M5K    1M5O    1M5P    1M5V    1NU4    1OIA    1SJ3    1SJ4    1SJF    1U6B    1URN    1VBX    1VBY    1VBZ    1VC0    1VC5    1VC6    1ZZN    2A3J    2NZ4    2OIH    2OJ3    2U1A    3BO2    3BO3    3BO4    3CUL    3CUN    3EGZ    3G8S    3G8T    3G96    3G9C    3HHN    3IIN    3IRW    3IWN    3K0J    3L3C    3MUM    3MUR    3MUT    3MUV    3MXH    3P49    3PGW    3R1H    3R1L    3UCU    3UCZ    3UD3    3UD4    3UTR    4C4W    4PR6    4PRF    4W90    4W92    4YB1    5DDO    5DDP    5DDQ    5DDR    5FJ4   
Structural Biology KnowledgeBase1AUD    1DRZ    1DZ5    1FHT    1M5K    1M5O    1M5P    1M5V    1NU4    1OIA    1SJ3    1SJ4    1SJF    1U6B    1URN    1VBX    1VBY    1VBZ    1VC0    1VC5    1VC6    1ZZN    2A3J    2NZ4    2OIH    2OJ3    2U1A    3BO2    3BO3    3BO4    3CUL    3CUN    3EGZ    3G8S    3G8T    3G96    3G9C    3HHN    3IIN    3IRW    3IWN    3K0J    3L3C    3MUM    3MUR    3MUT    3MUV    3MXH    3P49    3PGW    3R1H    3R1L    3UCU    3UCZ    3UD3    3UD4    3UTR    4C4W    4PR6    4PRF    4W90    4W92    4YB1    5DDO    5DDP    5DDQ    5DDR    5FJ4   
SCOP (Structural Classification of Proteins)1AUD    1DRZ    1DZ5    1FHT    1M5K    1M5O    1M5P    1M5V    1NU4    1OIA    1SJ3    1SJ4    1SJF    1U6B    1URN    1VBX    1VBY    1VBZ    1VC0    1VC5    1VC6    1ZZN    2A3J    2NZ4    2OIH    2OJ3    2U1A    3BO2    3BO3    3BO4    3CUL    3CUN    3EGZ    3G8S    3G8T    3G96    3G9C    3HHN    3IIN    3IRW    3IWN    3K0J    3L3C    3MUM    3MUR    3MUT    3MUV    3MXH    3P49    3PGW    3R1H    3R1L    3UCU    3UCZ    3UD3    3UD4    3UTR    4C4W    4PR6    4PRF    4W90    4W92    4YB1    5DDO    5DDP    5DDQ    5DDR    5FJ4   
CATH (Classification of proteins structures)1AUD    1DRZ    1DZ5    1FHT    1M5K    1M5O    1M5P    1M5V    1NU4    1OIA    1SJ3    1SJ4    1SJF    1U6B    1URN    1VBX    1VBY    1VBZ    1VC0    1VC5    1VC6    1ZZN    2A3J    2NZ4    2OIH    2OJ3    2U1A    3BO2    3BO3    3BO4    3CUL    3CUN    3EGZ    3G8S    3G8T    3G96    3G9C    3HHN    3IIN    3IRW    3IWN    3K0J    3L3C    3MUM    3MUR    3MUT    3MUV    3MXH    3P49    3PGW    3R1H    3R1L    3UCU    3UCZ    3UD3    3UD4    3UTR    4C4W    4PR6    4PRF    4W90    4W92    4YB1    5DDO    5DDP    5DDQ    5DDR    5FJ4   
SuperfamilyP09012
Human Protein Atlas [tissue]ENSG00000077312-SNRPA [tissue]
Peptide AtlasP09012
HPRD01658
IPIIPI00012382   IPI00909847   
Protein Interaction databases
DIP (DOE-UCLA)P09012
IntAct (EBI)P09012
FunCoupENSG00000077312
BioGRIDSNRPA
STRING (EMBL)SNRPA
ZODIACSNRPA
Ontologies - Pathways
QuickGOP09012
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  U1 snRNP  U1 snRNP  U1 snRNA binding  snRNA stem-loop binding  identical protein binding  regulation of mRNA polyadenylation  U1 snRNP binding  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  U1 snRNP  U1 snRNP  U1 snRNA binding  snRNA stem-loop binding  identical protein binding  regulation of mRNA polyadenylation  U1 snRNP binding  
Pathways : KEGGSpliceosome   
NDEx NetworkSNRPA
Atlas of Cancer Signalling NetworkSNRPA
Wikipedia pathwaysSNRPA
Orthology - Evolution
OrthoDB6626
GeneTree (enSembl)ENSG00000077312
Phylogenetic Trees/Animal Genes : TreeFamSNRPA
HOVERGENP09012
HOGENOMP09012
Homologs : HomoloGeneSNRPA
Homology/Alignments : Family Browser (UCSC)SNRPA
Gene fusions - Rearrangements
Fusion : QuiverSNRPA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRPA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRPA
dbVarSNRPA
ClinVarSNRPA
1000_GenomesSNRPA 
Exome Variant ServerSNRPA
ExAC (Exome Aggregation Consortium)ENSG00000077312
GNOMAD BrowserENSG00000077312
Varsome BrowserSNRPA
Genetic variants : HAPMAP6626
Genomic Variants (DGV)SNRPA [DGVbeta]
DECIPHERSNRPA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNRPA 
Mutations
ICGC Data PortalSNRPA 
TCGA Data PortalSNRPA 
Broad Tumor PortalSNRPA
OASIS PortalSNRPA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRPA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRPA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRPA
DgiDB (Drug Gene Interaction Database)SNRPA
DoCM (Curated mutations)SNRPA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRPA (select a term)
intoGenSNRPA
Cancer3DSNRPA(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182285   
Orphanet
DisGeNETSNRPA
MedgenSNRPA
Genetic Testing Registry SNRPA
NextProtP09012 [Medical]
TSGene6626
GENETestsSNRPA
Target ValidationSNRPA
Huge Navigator SNRPA [HugePedia]
snp3D : Map Gene to Disease6626
BioCentury BCIQSNRPA
ClinGenSNRPA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6626
Chemical/Pharm GKB GenePA35993
Clinical trialSNRPA
Miscellaneous
canSAR (ICR)SNRPA (select the gene name)
Probes
Litterature
PubMed77 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRPA
EVEXSNRPA
GoPubMedSNRPA
iHOPSNRPA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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