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SNRPA1 (small nuclear ribonucleoprotein polypeptide A')

Identity

Alias_symbol (synonym)Lea1
Other alias
HGNC (Hugo) SNRPA1
LocusID (NCBI) 6627
Atlas_Id 74033
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 101281510 and ends at 101295282 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNRPA1   11152
Cards
Entrez_Gene (NCBI)SNRPA1  6627  small nuclear ribonucleoprotein polypeptide A'
AliasesLea1
GeneCards (Weizmann)SNRPA1
Ensembl hg19 (Hinxton)ENSG00000131876 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131876 [Gene_View]  chr15:101281510-101295282 [Contig_View]  SNRPA1 [Vega]
ICGC DataPortalENSG00000131876
TCGA cBioPortalSNRPA1
AceView (NCBI)SNRPA1
Genatlas (Paris)SNRPA1
WikiGenes6627
SOURCE (Princeton)SNRPA1
Genetics Home Reference (NIH)SNRPA1
Genomic and cartography
GoldenPath hg38 (UCSC)SNRPA1  -     chr15:101281510-101295282 -  15q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNRPA1  -     15q26.3   [Description]    (hg19-Feb_2009)
EnsemblSNRPA1 - 15q26.3 [CytoView hg19]  SNRPA1 - 15q26.3 [CytoView hg38]
Mapping of homologs : NCBISNRPA1 [Mapview hg19]  SNRPA1 [Mapview hg38]
OMIM603521   
Gene and transcription
Genbank (Entrez)AJ130971 AJ130972 AK090986 AK223070 AK223110
RefSeq transcript (Entrez)NM_003090
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNRPA1
Cluster EST : UnigeneHs.528763 [ NCBI ]
CGAP (NCI)Hs.528763
Alternative Splicing GalleryENSG00000131876
Gene ExpressionSNRPA1 [ NCBI-GEO ]   SNRPA1 [ EBI - ARRAY_EXPRESS ]   SNRPA1 [ SEEK ]   SNRPA1 [ MEM ]
Gene Expression Viewer (FireBrowse)SNRPA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6627
GTEX Portal (Tissue expression)SNRPA1
Human Protein AtlasENSG00000131876-SNRPA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09661   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09661  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09661
Splice isoforms : SwissVarP09661
PhosPhoSitePlusP09661
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    U2A'_phosphoprotein32A_C   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LRRcap (SM00446)  
Conserved Domain (NCBI)SNRPA1
DMDM Disease mutations6627
Blocks (Seattle)SNRPA1
PDB (SRS)1A9N   
PDB (PDBSum)1A9N   
PDB (IMB)1A9N   
PDB (RSDB)1A9N   
Structural Biology KnowledgeBase1A9N   
SCOP (Structural Classification of Proteins)1A9N   
CATH (Classification of proteins structures)1A9N   
SuperfamilyP09661
Human Protein Atlas [tissue]ENSG00000131876-SNRPA1 [tissue]
Peptide AtlasP09661
HPRD04629
IPIIPI00297477   IPI00792607   IPI00797067   
Protein Interaction databases
DIP (DOE-UCLA)P09661
IntAct (EBI)P09661
FunCoupENSG00000131876
BioGRIDSNRPA1
STRING (EMBL)SNRPA1
ZODIACSNRPA1
Ontologies - Pathways
QuickGOP09661
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  spliceosomal complex  U2 snRNP  RNA splicing  nuclear speck  small nuclear ribonucleoprotein complex  U2 snRNA binding  catalytic step 2 spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  spliceosomal complex  U2 snRNP  RNA splicing  nuclear speck  small nuclear ribonucleoprotein complex  U2 snRNA binding  catalytic step 2 spliceosome  
Pathways : BIOCARTASpliceosomal Assembly [Genes]   
Pathways : KEGGSpliceosome   
NDEx NetworkSNRPA1
Atlas of Cancer Signalling NetworkSNRPA1
Wikipedia pathwaysSNRPA1
Orthology - Evolution
OrthoDB6627
GeneTree (enSembl)ENSG00000131876
Phylogenetic Trees/Animal Genes : TreeFamSNRPA1
HOVERGENP09661
HOGENOMP09661
Homologs : HomoloGeneSNRPA1
Homology/Alignments : Family Browser (UCSC)SNRPA1
Gene fusions - Rearrangements
Tumor Fusion PortalSNRPA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRPA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRPA1
dbVarSNRPA1
ClinVarSNRPA1
1000_GenomesSNRPA1 
Exome Variant ServerSNRPA1
ExAC (Exome Aggregation Consortium)ENSG00000131876
GNOMAD BrowserENSG00000131876
Genetic variants : HAPMAP6627
Genomic Variants (DGV)SNRPA1 [DGVbeta]
DECIPHERSNRPA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNRPA1 
Mutations
ICGC Data PortalSNRPA1 
TCGA Data PortalSNRPA1 
Broad Tumor PortalSNRPA1
OASIS PortalSNRPA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRPA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRPA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRPA1
DgiDB (Drug Gene Interaction Database)SNRPA1
DoCM (Curated mutations)SNRPA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRPA1 (select a term)
intoGenSNRPA1
Cancer3DSNRPA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603521   
Orphanet
DisGeNETSNRPA1
MedgenSNRPA1
Genetic Testing Registry SNRPA1
NextProtP09661 [Medical]
TSGene6627
GENETestsSNRPA1
Target ValidationSNRPA1
Huge Navigator SNRPA1 [HugePedia]
snp3D : Map Gene to Disease6627
BioCentury BCIQSNRPA1
ClinGenSNRPA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6627
Chemical/Pharm GKB GenePA35994
Clinical trialSNRPA1
Miscellaneous
canSAR (ICR)SNRPA1 (select the gene name)
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRPA1
EVEXSNRPA1
GoPubMedSNRPA1
iHOPSNRPA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:32:31 CET 2017

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