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SNRPB2 (small nuclear ribonucleoprotein polypeptide B2)

Identity

Alias_namessmall nuclear ribonucleoprotein polypeptide B2
small nuclear ribonucleoprotein polypeptide B''
small nuclear ribonucleoprotein polypeptide B
Alias_symbol (synonym)Msl1
U2B''
Other alias
HGNC (Hugo) SNRPB2
LocusID (NCBI) 6629
Atlas_Id 74035
Location 20p12.1  [Link to chromosome band 20p12]
Location_base_pair Starts at 16729964 and ends at 16741772 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNRPB2 (20p12.1) / CFAP97 (4q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNRPB2   11155
Cards
Entrez_Gene (NCBI)SNRPB2  6629  small nuclear ribonucleoprotein polypeptide B2
AliasesMsl1; U2B''
GeneCards (Weizmann)SNRPB2
Ensembl hg19 (Hinxton)ENSG00000125870 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125870 [Gene_View]  chr20:16729964-16741772 [Contig_View]  SNRPB2 [Vega]
ICGC DataPortalENSG00000125870
TCGA cBioPortalSNRPB2
AceView (NCBI)SNRPB2
Genatlas (Paris)SNRPB2
WikiGenes6629
SOURCE (Princeton)SNRPB2
Genetics Home Reference (NIH)SNRPB2
Genomic and cartography
GoldenPath hg38 (UCSC)SNRPB2  -     chr20:16729964-16741772 +  20p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNRPB2  -     20p12.1   [Description]    (hg19-Feb_2009)
EnsemblSNRPB2 - 20p12.1 [CytoView hg19]  SNRPB2 - 20p12.1 [CytoView hg38]
Mapping of homologs : NCBISNRPB2 [Mapview hg19]  SNRPB2 [Mapview hg38]
OMIM603520   
Gene and transcription
Genbank (Entrez)AA953215 AB451234 AB451359 AI741327 AK313004
RefSeq transcript (Entrez)NM_003092 NM_198220
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNRPB2
Cluster EST : UnigeneHs.280378 [ NCBI ]
CGAP (NCI)Hs.280378
Alternative Splicing GalleryENSG00000125870
Gene ExpressionSNRPB2 [ NCBI-GEO ]   SNRPB2 [ EBI - ARRAY_EXPRESS ]   SNRPB2 [ SEEK ]   SNRPB2 [ MEM ]
Gene Expression Viewer (FireBrowse)SNRPB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6629
GTEX Portal (Tissue expression)SNRPB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP08579   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP08579  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP08579
Splice isoforms : SwissVarP08579
PhosPhoSitePlusP08579
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)SNRPB2
DMDM Disease mutations6629
Blocks (Seattle)SNRPB2
PDB (SRS)1A9N   
PDB (PDBSum)1A9N   
PDB (IMB)1A9N   
PDB (RSDB)1A9N   
Structural Biology KnowledgeBase1A9N   
SCOP (Structural Classification of Proteins)1A9N   
CATH (Classification of proteins structures)1A9N   
SuperfamilyP08579
Human Protein AtlasENSG00000125870
Peptide AtlasP08579
HPRD04628
IPIIPI00029267   
Protein Interaction databases
DIP (DOE-UCLA)P08579
IntAct (EBI)P08579
FunCoupENSG00000125870
BioGRIDSNRPB2
STRING (EMBL)SNRPB2
ZODIACSNRPB2
Ontologies - Pathways
QuickGOP08579
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  fibrillar center  protein binding  nucleoplasm  spliceosomal complex  U1 snRNP  U2 snRNP  nuclear speck  U1 snRNA binding  snRNA stem-loop binding  snRNP binding  catalytic step 2 spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  fibrillar center  protein binding  nucleoplasm  spliceosomal complex  U1 snRNP  U2 snRNP  nuclear speck  U1 snRNA binding  snRNA stem-loop binding  snRNP binding  catalytic step 2 spliceosome  
Pathways : BIOCARTASpliceosomal Assembly [Genes]   
Pathways : KEGGSpliceosome   
NDEx NetworkSNRPB2
Atlas of Cancer Signalling NetworkSNRPB2
Wikipedia pathwaysSNRPB2
Orthology - Evolution
OrthoDB6629
GeneTree (enSembl)ENSG00000125870
Phylogenetic Trees/Animal Genes : TreeFamSNRPB2
HOVERGENP08579
HOGENOMP08579
Homologs : HomoloGeneSNRPB2
Homology/Alignments : Family Browser (UCSC)SNRPB2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRPB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRPB2
dbVarSNRPB2
ClinVarSNRPB2
1000_GenomesSNRPB2 
Exome Variant ServerSNRPB2
ExAC (Exome Aggregation Consortium)SNRPB2 (select the gene name)
Genetic variants : HAPMAP6629
Genomic Variants (DGV)SNRPB2 [DGVbeta]
DECIPHERSNRPB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNRPB2 
Mutations
ICGC Data PortalSNRPB2 
TCGA Data PortalSNRPB2 
Broad Tumor PortalSNRPB2
OASIS PortalSNRPB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRPB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRPB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRPB2
DgiDB (Drug Gene Interaction Database)SNRPB2
DoCM (Curated mutations)SNRPB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRPB2 (select a term)
intoGenSNRPB2
Cancer3DSNRPB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603520   
Orphanet
MedgenSNRPB2
Genetic Testing Registry SNRPB2
NextProtP08579 [Medical]
TSGene6629
GENETestsSNRPB2
Target ValidationSNRPB2
Huge Navigator SNRPB2 [HugePedia]
snp3D : Map Gene to Disease6629
BioCentury BCIQSNRPB2
ClinGenSNRPB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6629
Chemical/Pharm GKB GenePA35996
Clinical trialSNRPB2
Miscellaneous
canSAR (ICR)SNRPB2 (select the gene name)
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRPB2
EVEXSNRPB2
GoPubMedSNRPB2
iHOPSNRPB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:30 CEST 2017

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