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SNRPC (small nuclear ribonucleoprotein polypeptide C)

Identity

Alias_symbol (synonym)U1-C
Yhc1
Other aliasU1C
HGNC (Hugo) SNRPC
LocusID (NCBI) 6631
Atlas_Id 74036
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 34757094 and ends at 34773857 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SFTPB (2p11.2) / SNRPC (6p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNRPC   11157
Cards
Entrez_Gene (NCBI)SNRPC  6631  small nuclear ribonucleoprotein polypeptide C
AliasesU1C; Yhc1
GeneCards (Weizmann)SNRPC
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:34757094-34773857 [Contig_View]  SNRPC [Vega]
TCGA cBioPortalSNRPC
AceView (NCBI)SNRPC
Genatlas (Paris)SNRPC
WikiGenes6631
SOURCE (Princeton)SNRPC
Genetics Home Reference (NIH)SNRPC
Genomic and cartography
GoldenPath hg38 (UCSC)SNRPC  -     chr6:34757094-34773857 +  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNRPC  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblSNRPC - 6p21.31 [CytoView hg19]  SNRPC - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBISNRPC [Mapview hg19]  SNRPC [Mapview hg38]
OMIM603522   
Gene and transcription
Genbank (Entrez)AI356808 AK223098 AK311955 BC121082 BC121083
RefSeq transcript (Entrez)NM_003093
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNRPC
Cluster EST : UnigeneHs.1063 [ NCBI ]
CGAP (NCI)Hs.1063
Gene ExpressionSNRPC [ NCBI-GEO ]   SNRPC [ EBI - ARRAY_EXPRESS ]   SNRPC [ SEEK ]   SNRPC [ MEM ]
Gene Expression Viewer (FireBrowse)SNRPC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6631
GTEX Portal (Tissue expression)SNRPC
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09234   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09234  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09234
Splice isoforms : SwissVarP09234
PhosPhoSitePlusP09234
Domaine pattern : Prosite (Expaxy)ZF_MATRIN (PS50171)   
Domains : Interpro (EBI)U1_snRNP-C    Znf_C2H2_matrin    Znf_U1    Znf_U1-C   
Domain families : Pfam (Sanger)zf-U1 (PF06220)   
Domain families : Pfam (NCBI)pfam06220   
Domain families : Smart (EMBL)ZnF_U1 (SM00451)  
Conserved Domain (NCBI)SNRPC
DMDM Disease mutations6631
Blocks (Seattle)SNRPC
PDB (SRS)2VRD    3CW1    4PJO   
PDB (PDBSum)2VRD    3CW1    4PJO   
PDB (IMB)2VRD    3CW1    4PJO   
PDB (RSDB)2VRD    3CW1    4PJO   
Structural Biology KnowledgeBase2VRD    3CW1    4PJO   
SCOP (Structural Classification of Proteins)2VRD    3CW1    4PJO   
CATH (Classification of proteins structures)2VRD    3CW1    4PJO   
SuperfamilyP09234
Peptide AtlasP09234
HPRD04630
IPIIPI00013396   IPI00641788   IPI00644813   
Protein Interaction databases
DIP (DOE-UCLA)P09234
IntAct (EBI)P09234
BioGRIDSNRPC
STRING (EMBL)SNRPC
ZODIACSNRPC
Ontologies - Pathways
QuickGOP09234
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                    
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                    
Pathways : BIOCARTASpliceosomal Assembly [Genes]   
NDEx NetworkSNRPC
Atlas of Cancer Signalling NetworkSNRPC
Wikipedia pathwaysSNRPC
Orthology - Evolution
OrthoDB6631
Phylogenetic Trees/Animal Genes : TreeFamSNRPC
HOVERGENP09234
HOGENOMP09234
Homologs : HomoloGeneSNRPC
Homology/Alignments : Family Browser (UCSC)SNRPC
Gene fusions - Rearrangements
Fusion : QuiverSNRPC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRPC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRPC
dbVarSNRPC
ClinVarSNRPC
1000_GenomesSNRPC 
Exome Variant ServerSNRPC
Genetic variants : HAPMAP6631
Genomic Variants (DGV)SNRPC [DGVbeta]
DECIPHERSNRPC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNRPC 
Mutations
ICGC Data PortalSNRPC 
TCGA Data PortalSNRPC 
Broad Tumor PortalSNRPC
OASIS PortalSNRPC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRPC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRPC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRPC
DgiDB (Drug Gene Interaction Database)SNRPC
DoCM (Curated mutations)SNRPC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRPC (select a term)
intoGenSNRPC
Cancer3DSNRPC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603522   
Orphanet
DisGeNETSNRPC
MedgenSNRPC
Genetic Testing Registry SNRPC
NextProtP09234 [Medical]
TSGene6631
GENETestsSNRPC
Target ValidationSNRPC
Huge Navigator SNRPC [HugePedia]
snp3D : Map Gene to Disease6631
BioCentury BCIQSNRPC
ClinGenSNRPC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6631
Chemical/Pharm GKB GenePA35998
Clinical trialSNRPC
Miscellaneous
canSAR (ICR)SNRPC (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRPC
EVEXSNRPC
GoPubMedSNRPC
iHOPSNRPC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:53:50 CET 2018

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