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SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide)

Identity

Alias_namesSNRPD
small nuclear ribonucleoprotein D1 polypeptide (16kD)
small nuclear ribonucleoprotein D1 polypeptide 16kDa
Alias_symbol (synonym)HsT2456
Sm-D1
Other aliasSMD1
HGNC (Hugo) SNRPD1
LocusID (NCBI) 6632
Atlas_Id 53452
Location 18q11.2  [Link to chromosome band 18q11]
Location_base_pair Starts at 21612269 and ends at 21630245 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NKX3-1 (8p21.2) / SNRPD1 (18q11.2)SNRPD1 (18q11.2) / JMJD1C (10q21.3)SNRPD1 (18q11.2) / RPS13 (11p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNRPD1   11158
Cards
Entrez_Gene (NCBI)SNRPD1  6632  small nuclear ribonucleoprotein D1 polypeptide
AliasesHsT2456; SMD1; SNRPD; Sm-D1
GeneCards (Weizmann)SNRPD1
Ensembl hg19 (Hinxton)ENSG00000167088 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167088 [Gene_View]  chr18:21612269-21630245 [Contig_View]  SNRPD1 [Vega]
ICGC DataPortalENSG00000167088
TCGA cBioPortalSNRPD1
AceView (NCBI)SNRPD1
Genatlas (Paris)SNRPD1
WikiGenes6632
SOURCE (Princeton)SNRPD1
Genetics Home Reference (NIH)SNRPD1
Genomic and cartography
GoldenPath hg38 (UCSC)SNRPD1  -     chr18:21612269-21630245 +  18q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNRPD1  -     18q11.2   [Description]    (hg19-Feb_2009)
EnsemblSNRPD1 - 18q11.2 [CytoView hg19]  SNRPD1 - 18q11.2 [CytoView hg38]
Mapping of homologs : NCBISNRPD1 [Mapview hg19]  SNRPD1 [Mapview hg38]
OMIM601063   
Gene and transcription
Genbank (Entrez)AB451227 AB451350 AJ577268 BC001721 BC072427
RefSeq transcript (Entrez)NM_001291916 NM_006938
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNRPD1
Cluster EST : UnigeneHs.464734 [ NCBI ]
CGAP (NCI)Hs.464734
Alternative Splicing GalleryENSG00000167088
Gene ExpressionSNRPD1 [ NCBI-GEO ]   SNRPD1 [ EBI - ARRAY_EXPRESS ]   SNRPD1 [ SEEK ]   SNRPD1 [ MEM ]
Gene Expression Viewer (FireBrowse)SNRPD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6632
GTEX Portal (Tissue expression)SNRPD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62314   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62314  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62314
Splice isoforms : SwissVarP62314
PhosPhoSitePlusP62314
Domains : Interpro (EBI)LSm4/Sm_D1/D3    LSM_dom    LSM_dom_euk/arc    Sm_D1   
Domain families : Pfam (Sanger)LSM (PF01423)   
Domain families : Pfam (NCBI)pfam01423   
Domain families : Smart (EMBL)Sm (SM00651)  
Conserved Domain (NCBI)SNRPD1
DMDM Disease mutations6632
Blocks (Seattle)SNRPD1
PDB (SRS)1B34    3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
PDB (PDBSum)1B34    3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
PDB (IMB)1B34    3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
PDB (RSDB)1B34    3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
Structural Biology KnowledgeBase1B34    3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
SCOP (Structural Classification of Proteins)1B34    3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
CATH (Classification of proteins structures)1B34    3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
SuperfamilyP62314
Human Protein AtlasENSG00000167088
Peptide AtlasP62314
HPRD03040
IPIIPI00302850   
Protein Interaction databases
DIP (DOE-UCLA)P62314
IntAct (EBI)P62314
FunCoupENSG00000167088
BioGRIDSNRPD1
STRING (EMBL)SNRPD1
ZODIACSNRPD1
Ontologies - Pathways
QuickGOP62314
Ontology : AmiGOcommitment complex  spliceosomal complex assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleus  nucleoplasm  U5 snRNP  U1 snRNP  U2 snRNP  U4 snRNP  U12-type spliceosomal complex  cytosol  cytosol  RNA splicing  small nuclear ribonucleoprotein complex  methylosome  pICln-Sm protein complex  SMN-Sm protein complex  nuclear import  prespliceosome  precatalytic spliceosome  catalytic step 2 spliceosome  spliceosomal tri-snRNP complex  U1 snRNP binding  
Ontology : EGO-EBIcommitment complex  spliceosomal complex assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleus  nucleoplasm  U5 snRNP  U1 snRNP  U2 snRNP  U4 snRNP  U12-type spliceosomal complex  cytosol  cytosol  RNA splicing  small nuclear ribonucleoprotein complex  methylosome  pICln-Sm protein complex  SMN-Sm protein complex  nuclear import  prespliceosome  precatalytic spliceosome  catalytic step 2 spliceosome  spliceosomal tri-snRNP complex  U1 snRNP binding  
Pathways : BIOCARTASpliceosomal Assembly [Genes]   
Pathways : KEGGSpliceosome    Systemic lupus erythematosus   
NDEx NetworkSNRPD1
Atlas of Cancer Signalling NetworkSNRPD1
Wikipedia pathwaysSNRPD1
Orthology - Evolution
OrthoDB6632
GeneTree (enSembl)ENSG00000167088
Phylogenetic Trees/Animal Genes : TreeFamSNRPD1
HOVERGENP62314
HOGENOMP62314
Homologs : HomoloGeneSNRPD1
Homology/Alignments : Family Browser (UCSC)SNRPD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRPD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRPD1
dbVarSNRPD1
ClinVarSNRPD1
1000_GenomesSNRPD1 
Exome Variant ServerSNRPD1
ExAC (Exome Aggregation Consortium)SNRPD1 (select the gene name)
Genetic variants : HAPMAP6632
Genomic Variants (DGV)SNRPD1 [DGVbeta]
DECIPHERSNRPD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNRPD1 
Mutations
ICGC Data PortalSNRPD1 
TCGA Data PortalSNRPD1 
Broad Tumor PortalSNRPD1
OASIS PortalSNRPD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRPD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRPD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRPD1
DgiDB (Drug Gene Interaction Database)SNRPD1
DoCM (Curated mutations)SNRPD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRPD1 (select a term)
intoGenSNRPD1
Cancer3DSNRPD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601063   
Orphanet
MedgenSNRPD1
Genetic Testing Registry SNRPD1
NextProtP62314 [Medical]
TSGene6632
GENETestsSNRPD1
Target ValidationSNRPD1
Huge Navigator SNRPD1 [HugePedia]
snp3D : Map Gene to Disease6632
BioCentury BCIQSNRPD1
ClinGenSNRPD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6632
Chemical/Pharm GKB GenePA164742464
Clinical trialSNRPD1
Miscellaneous
canSAR (ICR)SNRPD1 (select the gene name)
Probes
Litterature
PubMed88 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRPD1
EVEXSNRPD1
GoPubMedSNRPD1
iHOPSNRPD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:56:45 CEST 2017

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