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SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide 16.5kDa)

Identity

Alias_namesSNRPD1
small nuclear ribonucleoprotein D2 polypeptide (16.5kD)
small nuclear ribonucleoprotein D2 polypeptide 16.5kDa
Alias_symbol (synonym)Sm-D2
Other aliasSMD2
HGNC (Hugo) SNRPD2
LocusID (NCBI) 6633
Atlas_Id 74037
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 46190712 and ends at 46195443 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FBXO46 (19q13.32) / SNRPD2 (19q13.32)SNRPD2 (19q13.32) / COL24A1 (1p22.3)SNRPD2 (19q13.32) / SNRPD2 (19q13.32)
SNRPD2 (19q13.32) / VCP (9p13.3)TAGLN3 (3q13.2) / SNRPD2 (19q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNRPD2   11159
Cards
Entrez_Gene (NCBI)SNRPD2  6633  small nuclear ribonucleoprotein D2 polypeptide 16.5kDa
AliasesSMD2; SNRPD1; Sm-D2
GeneCards (Weizmann)SNRPD2
Ensembl hg19 (Hinxton)ENSG00000125743 [Gene_View]  chr19:46190712-46195443 [Contig_View]  SNRPD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125743 [Gene_View]  chr19:46190712-46195443 [Contig_View]  SNRPD2 [Vega]
ICGC DataPortalENSG00000125743
TCGA cBioPortalSNRPD2
AceView (NCBI)SNRPD2
Genatlas (Paris)SNRPD2
WikiGenes6633
SOURCE (Princeton)SNRPD2
Genetics Home Reference (NIH)SNRPD2
Genomic and cartography
GoldenPath hg19 (UCSC)SNRPD2  -     chr19:46190712-46195443 -  19q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNRPD2  -     19q13.32   [Description]    (hg38-Dec_2013)
EnsemblSNRPD2 - 19q13.32 [CytoView hg19]  SNRPD2 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBISNRPD2 [Mapview hg19]  SNRPD2 [Mapview hg38]
OMIM601061   
Gene and transcription
Genbank (Entrez)AJ707552 AK291912 BC000486 BC001930 BG528418
RefSeq transcript (Entrez)NM_004597 NM_177542
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)SNRPD2
Cluster EST : UnigeneHs.515472 [ NCBI ]
CGAP (NCI)Hs.515472
Alternative Splicing GalleryENSG00000125743
Gene ExpressionSNRPD2 [ NCBI-GEO ]   SNRPD2 [ EBI - ARRAY_EXPRESS ]   SNRPD2 [ SEEK ]   SNRPD2 [ MEM ]
Gene Expression Viewer (FireBrowse)SNRPD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6633
GTEX Portal (Tissue expression)SNRPD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62316   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62316  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62316
Splice isoforms : SwissVarP62316
PhosPhoSitePlusP62316
Domains : Interpro (EBI)LSM_dom    Ribonucl_LSM    Ribonucl_LSM_euk/arc    Sm_D2   
Domain families : Pfam (Sanger)LSM (PF01423)   
Domain families : Pfam (NCBI)pfam01423   
Domain families : Smart (EMBL)Sm (SM00651)  
Conserved Domain (NCBI)SNRPD2
DMDM Disease mutations6633
Blocks (Seattle)SNRPD2
PDB (SRS)1B34    3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
PDB (PDBSum)1B34    3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
PDB (IMB)1B34    3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
PDB (RSDB)1B34    3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
Structural Biology KnowledgeBase1B34    3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
SCOP (Structural Classification of Proteins)1B34    3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
CATH (Classification of proteins structures)1B34    3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
SuperfamilyP62316
Human Protein AtlasENSG00000125743
Peptide AtlasP62316
HPRD03038
IPIIPI00017963   IPI00930678   
Protein Interaction databases
DIP (DOE-UCLA)P62316
IntAct (EBI)P62316
FunCoupENSG00000125743
BioGRIDSNRPD2
STRING (EMBL)SNRPD2
ZODIACSNRPD2
Ontologies - Pathways
QuickGOP62316
Ontology : AmiGOspliceosomal complex assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  nucleoplasm  spliceosomal complex  U1 snRNP  U4 snRNP  U12-type spliceosomal complex  cytosol  cytosol  RNA splicing  gene expression  small nuclear ribonucleoprotein complex  ncRNA metabolic process  methylosome  pICln-Sm protein complex  SMN-Sm protein complex  poly(A) RNA binding  extracellular exosome  catalytic step 2 spliceosome  
Ontology : EGO-EBIspliceosomal complex assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  nucleoplasm  spliceosomal complex  U1 snRNP  U4 snRNP  U12-type spliceosomal complex  cytosol  cytosol  RNA splicing  gene expression  small nuclear ribonucleoprotein complex  ncRNA metabolic process  methylosome  pICln-Sm protein complex  SMN-Sm protein complex  poly(A) RNA binding  extracellular exosome  catalytic step 2 spliceosome  
Pathways : BIOCARTASpliceosomal Assembly [Genes]   
Pathways : KEGGSpliceosome   
NDEx NetworkSNRPD2
Atlas of Cancer Signalling NetworkSNRPD2
Wikipedia pathwaysSNRPD2
Orthology - Evolution
OrthoDB6633
GeneTree (enSembl)ENSG00000125743
Phylogenetic Trees/Animal Genes : TreeFamSNRPD2
HOVERGENP62316
HOGENOMP62316
Homologs : HomoloGeneSNRPD2
Homology/Alignments : Family Browser (UCSC)SNRPD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRPD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRPD2
dbVarSNRPD2
ClinVarSNRPD2
1000_GenomesSNRPD2 
Exome Variant ServerSNRPD2
ExAC (Exome Aggregation Consortium)SNRPD2 (select the gene name)
Genetic variants : HAPMAP6633
Genomic Variants (DGV)SNRPD2 [DGVbeta]
DECIPHER (Syndromes)19:46190712-46195443  ENSG00000125743
CONAN: Copy Number AnalysisSNRPD2 
Mutations
ICGC Data PortalSNRPD2 
TCGA Data PortalSNRPD2 
Broad Tumor PortalSNRPD2
OASIS PortalSNRPD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRPD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRPD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRPD2
DgiDB (Drug Gene Interaction Database)SNRPD2
DoCM (Curated mutations)SNRPD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRPD2 (select a term)
intoGenSNRPD2
Cancer3DSNRPD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601061   
Orphanet
MedgenSNRPD2
Genetic Testing Registry SNRPD2
NextProtP62316 [Medical]
TSGene6633
GENETestsSNRPD2
Huge Navigator SNRPD2 [HugePedia]
snp3D : Map Gene to Disease6633
BioCentury BCIQSNRPD2
ClinGenSNRPD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6633
Chemical/Pharm GKB GenePA36000
Clinical trialSNRPD2
Miscellaneous
canSAR (ICR)SNRPD2 (select the gene name)
Probes
Litterature
PubMed86 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRPD2
EVEXSNRPD2
GoPubMedSNRPD2
iHOPSNRPD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:02 CET 2017

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