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SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide)

Identity

Alias_namessmall nuclear ribonucleoprotein D3 polypeptide (18kD)
small nuclear ribonucleoprotein D3 polypeptide 18kDa
Alias_symbol (synonym)SMD3
Sm-D3
Other alias
HGNC (Hugo) SNRPD3
LocusID (NCBI) 6634
Atlas_Id 74039
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 24555650 and ends at 24574964 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNRPD3 (22q11.23) / SNRPD3 (22q11.23)SNRPD3 (22q11.23) / UPB1 (22q11.23)SYT7 (11q12.2) / SNRPD3 (22q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNRPD3   11160
Cards
Entrez_Gene (NCBI)SNRPD3  6634  small nuclear ribonucleoprotein D3 polypeptide
AliasesSMD3; Sm-D3
GeneCards (Weizmann)SNRPD3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:24555650-24574964 [Contig_View]  SNRPD3 [Vega]
TCGA cBioPortalSNRPD3
AceView (NCBI)SNRPD3
Genatlas (Paris)SNRPD3
WikiGenes6634
SOURCE (Princeton)SNRPD3
Genetics Home Reference (NIH)SNRPD3
Genomic and cartography
GoldenPath hg38 (UCSC)SNRPD3  -     chr22:24555650-24574964 +  22q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNRPD3  -     22q11.23   [Description]    (hg19-Feb_2009)
EnsemblSNRPD3 - 22q11.23 [CytoView hg19]  SNRPD3 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBISNRPD3 [Mapview hg19]  SNRPD3 [Mapview hg38]
OMIM601062   
Gene and transcription
Genbank (Entrez)AB451249 AB451373 AK296173 BC000457 BC003150
RefSeq transcript (Entrez)NM_001278656 NM_004175
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNRPD3
Cluster EST : UnigeneHs.356549 [ NCBI ]
CGAP (NCI)Hs.356549
Gene ExpressionSNRPD3 [ NCBI-GEO ]   SNRPD3 [ EBI - ARRAY_EXPRESS ]   SNRPD3 [ SEEK ]   SNRPD3 [ MEM ]
Gene Expression Viewer (FireBrowse)SNRPD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6634
GTEX Portal (Tissue expression)SNRPD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62318   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62318  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62318
Splice isoforms : SwissVarP62318
PhosPhoSitePlusP62318
Domains : Interpro (EBI)LSm4/Sm_D1/D3    LSM_dom    LSM_dom_euk/arc    SmD3   
Domain families : Pfam (Sanger)LSM (PF01423)   
Domain families : Pfam (NCBI)pfam01423   
Domain families : Smart (EMBL)Sm (SM00651)  
Conserved Domain (NCBI)SNRPD3
DMDM Disease mutations6634
Blocks (Seattle)SNRPD3
PDB (SRS)1D3B    3CW1    3JCR    3PGW    3VRI    4PJO    4WZJ   
PDB (PDBSum)1D3B    3CW1    3JCR    3PGW    3VRI    4PJO    4WZJ   
PDB (IMB)1D3B    3CW1    3JCR    3PGW    3VRI    4PJO    4WZJ   
PDB (RSDB)1D3B    3CW1    3JCR    3PGW    3VRI    4PJO    4WZJ   
Structural Biology KnowledgeBase1D3B    3CW1    3JCR    3PGW    3VRI    4PJO    4WZJ   
SCOP (Structural Classification of Proteins)1D3B    3CW1    3JCR    3PGW    3VRI    4PJO    4WZJ   
CATH (Classification of proteins structures)1D3B    3CW1    3JCR    3PGW    3VRI    4PJO    4WZJ   
SuperfamilyP62318
Peptide AtlasP62318
HPRD03039
IPIIPI00017964   IPI00878876   
Protein Interaction databases
DIP (DOE-UCLA)P62318
IntAct (EBI)P62318
BioGRIDSNRPD3
STRING (EMBL)SNRPD3
ZODIACSNRPD3
Ontologies - Pathways
QuickGOP62318
Ontology : AmiGOcommitment complex  spliceosomal complex assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  U5 snRNP  U7 snRNP  U1 snRNP  U2 snRNP  U4 snRNP  U12-type spliceosomal complex  telomerase holoenzyme complex  cytosol  cytosol  termination of RNA polymerase II transcription  protein methylation  histone mRNA metabolic process  RNA splicing  nuclear body  enzyme binding  small nuclear ribonucleoprotein complex  U2 snRNA binding  methylosome  pICln-Sm protein complex  SMN-Sm protein complex  nuclear import  telomerase RNA binding  extracellular exosome  prespliceosome  precatalytic spliceosome  catalytic step 2 spliceosome  histone pre-mRNA DCP binding  U7 snRNA binding  spliceosomal tri-snRNP complex  U1 snRNP binding  
Ontology : EGO-EBIcommitment complex  spliceosomal complex assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  U5 snRNP  U7 snRNP  U1 snRNP  U2 snRNP  U4 snRNP  U12-type spliceosomal complex  telomerase holoenzyme complex  cytosol  cytosol  termination of RNA polymerase II transcription  protein methylation  histone mRNA metabolic process  RNA splicing  nuclear body  enzyme binding  small nuclear ribonucleoprotein complex  U2 snRNA binding  methylosome  pICln-Sm protein complex  SMN-Sm protein complex  nuclear import  telomerase RNA binding  extracellular exosome  prespliceosome  precatalytic spliceosome  catalytic step 2 spliceosome  histone pre-mRNA DCP binding  U7 snRNA binding  spliceosomal tri-snRNP complex  U1 snRNP binding  
Pathways : BIOCARTASpliceosomal Assembly [Genes]   
Pathways : KEGGSpliceosome    Systemic lupus erythematosus   
NDEx NetworkSNRPD3
Atlas of Cancer Signalling NetworkSNRPD3
Wikipedia pathwaysSNRPD3
Orthology - Evolution
OrthoDB6634
Phylogenetic Trees/Animal Genes : TreeFamSNRPD3
HOVERGENP62318
HOGENOMP62318
Homologs : HomoloGeneSNRPD3
Homology/Alignments : Family Browser (UCSC)SNRPD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRPD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRPD3
dbVarSNRPD3
ClinVarSNRPD3
1000_GenomesSNRPD3 
Exome Variant ServerSNRPD3
ExAC (Exome Aggregation Consortium)SNRPD3 (select the gene name)
Genetic variants : HAPMAP6634
Genomic Variants (DGV)SNRPD3 [DGVbeta]
DECIPHERSNRPD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNRPD3 
Mutations
ICGC Data PortalSNRPD3 
TCGA Data PortalSNRPD3 
Broad Tumor PortalSNRPD3
OASIS PortalSNRPD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRPD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRPD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRPD3
DgiDB (Drug Gene Interaction Database)SNRPD3
DoCM (Curated mutations)SNRPD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRPD3 (select a term)
intoGenSNRPD3
Cancer3DSNRPD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601062   
Orphanet
MedgenSNRPD3
Genetic Testing Registry SNRPD3
NextProtP62318 [Medical]
TSGene6634
GENETestsSNRPD3
Target ValidationSNRPD3
Huge Navigator SNRPD3 [HugePedia]
snp3D : Map Gene to Disease6634
BioCentury BCIQSNRPD3
ClinGenSNRPD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6634
Chemical/Pharm GKB GenePA36001
Clinical trialSNRPD3
Miscellaneous
canSAR (ICR)SNRPD3 (select the gene name)
Probes
Litterature
PubMed95 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRPD3
EVEXSNRPD3
GoPubMedSNRPD3
iHOPSNRPD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:01 CEST 2017

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