| Nomenclature |
|---|
| HGNC (Hugo) | SNRPE 11161 |
| Cards |
|---|
| Entrez_Gene (NCBI) | SNRPE 6635 small nuclear ribonucleoprotein polypeptide E |
| Aliases | HYPT11; SME; Sm-E; snRNP-E |
| GeneCards (Weizmann) | SNRPE |
| Ensembl hg19 (Hinxton) | ENSG00000182004 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000182004 [Gene_View] ENSG00000182004 [Sequence] chr1:203861585-203871152 [Contig_View] SNRPE [Vega] |
| ICGC DataPortal | ENSG00000182004 |
| TCGA cBioPortal | SNRPE |
| AceView (NCBI) | SNRPE |
| Genatlas (Paris) | SNRPE |
| WikiGenes | 6635 |
| SOURCE (Princeton) | SNRPE |
| Genetics Home Reference (NIH) | SNRPE |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | SNRPE - chr1:203861585-203871152 + 1q32.1 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | SNRPE - 1q32.1 [Description] (hg19-Feb_2009) |
| GoldenPath | SNRPE - 1q32.1 [CytoView hg19] SNRPE - 1q32.1 [CytoView hg38] |
| ImmunoBase | ENSG00000182004 |
| Mapping of homologs : NCBI | SNRPE [Mapview hg19] SNRPE [Mapview hg38] |
| OMIM | 128260 615059 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AA344740 AI263891 AK307255 AK309140 AK312130 |
| RefSeq transcript (Entrez) | NM_001304464 NM_001328637 NM_001328638 NM_003094 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | SNRPE |
| Cluster EST : Unigene | Hs.654418 [ NCBI ] |
| CGAP (NCI) | Hs.654418 |
| Alternative Splicing Gallery | ENSG00000182004 |
| Gene Expression | SNRPE [ NCBI-GEO ] SNRPE [ EBI - ARRAY_EXPRESS ]
SNRPE [ SEEK ] SNRPE [ MEM ] |
| Gene Expression Viewer (FireBrowse) | SNRPE [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 6635 |
| GTEX Portal (Tissue expression) | SNRPE |
| Human Protein Atlas | ENSG00000182004-SNRPE [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | P62304 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | P62304 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | P62304 |
| Splice isoforms : SwissVar | P62304 |
| PhosPhoSitePlus | P62304 |
| Domains : Interpro (EBI) | LSM_dom_euk/arc LSM_dom_sf snRNP-E |
| Domain families : Pfam (Sanger) | LSM (PF01423) |
| Domain families : Pfam (NCBI) | pfam01423 |
| Domain families : Smart (EMBL) | Sm (SM00651) |
| Conserved Domain (NCBI) | SNRPE |
| DMDM Disease mutations | 6635 |
| Blocks (Seattle) | SNRPE |
| PDB (RSDB) | 3CW1 3JCR 3PGW 3S6N 4F7U 4PJO 4V98 4WZJ 5MQF 5O9Z 5XJC |
| PDB Europe | 3CW1 3JCR 3PGW 3S6N 4F7U 4PJO 4V98 4WZJ 5MQF 5O9Z 5XJC |
| PDB (PDBSum) | 3CW1 3JCR 3PGW 3S6N 4F7U 4PJO 4V98 4WZJ 5MQF 5O9Z 5XJC |
| PDB (IMB) | 3CW1 3JCR 3PGW 3S6N 4F7U 4PJO 4V98 4WZJ 5MQF 5O9Z 5XJC |
| Structural Biology KnowledgeBase | 3CW1 3JCR 3PGW 3S6N 4F7U 4PJO 4V98 4WZJ 5MQF 5O9Z 5XJC |
| SCOP (Structural Classification of Proteins) | 3CW1 3JCR 3PGW 3S6N 4F7U 4PJO 4V98 4WZJ 5MQF 5O9Z 5XJC |
| CATH (Classification of proteins structures) | 3CW1 3JCR 3PGW 3S6N 4F7U 4PJO 4V98 4WZJ 5MQF 5O9Z 5XJC |
| Superfamily | P62304 |
| Human Protein Atlas [tissue] | ENSG00000182004-SNRPE [tissue] |
| Peptide Atlas | P62304 |
| HPRD | 00548 |
| IPI | IPI00029266 IPI00647942 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | P62304 |
| IntAct (EBI) | P62304 |
| FunCoup | ENSG00000182004 |
| BioGRID | SNRPE |
| STRING (EMBL) | SNRPE |
| ZODIAC | SNRPE |
| Ontologies - Pathways |
|---|
| QuickGO | P62304 |
| Ontology : AmiGO | spliceosomal complex assembly spliceosomal snRNP assembly spliceosomal snRNP assembly spliceosomal snRNP assembly mRNA splicing, via spliceosome mRNA splicing, via spliceosome mRNA splicing, via spliceosome RNA binding protein binding nucleus nucleoplasm spliceosomal complex U5 snRNP U7 snRNP U1 snRNP U1 snRNP U2 snRNP U4 snRNP U4 snRNP U12-type spliceosomal complex telomerase holoenzyme complex cytosol cytosol termination of RNA polymerase II transcription histone mRNA metabolic process small nuclear ribonucleoprotein complex methylosome pICln-Sm protein complex SMN-Sm protein complex hair cycle U4/U6 x U5 tri-snRNP complex U4/U6 x U5 tri-snRNP complex import into nucleus U2-type precatalytic spliceosome U2-type catalytic step 2 spliceosome catalytic step 2 spliceosome |
| Ontology : EGO-EBI | spliceosomal complex assembly spliceosomal snRNP assembly spliceosomal snRNP assembly spliceosomal snRNP assembly mRNA splicing, via spliceosome mRNA splicing, via spliceosome mRNA splicing, via spliceosome RNA binding protein binding nucleus nucleoplasm spliceosomal complex U5 snRNP U7 snRNP U1 snRNP U1 snRNP U2 snRNP U4 snRNP U4 snRNP U12-type spliceosomal complex telomerase holoenzyme complex cytosol cytosol termination of RNA polymerase II transcription histone mRNA metabolic process small nuclear ribonucleoprotein complex methylosome pICln-Sm protein complex SMN-Sm protein complex hair cycle U4/U6 x U5 tri-snRNP complex U4/U6 x U5 tri-snRNP complex import into nucleus U2-type precatalytic spliceosome U2-type catalytic step 2 spliceosome catalytic step 2 spliceosome |
| Pathways : KEGG | Spliceosome |
| NDEx Network | SNRPE |
| Atlas of Cancer Signalling Network | SNRPE |
| Wikipedia pathways | SNRPE |
| Orthology - Evolution |
|---|
| OrthoDB | 6635 |
| GeneTree (enSembl) | ENSG00000182004 |
| Phylogenetic Trees/Animal Genes : TreeFam | SNRPE |
| HOGENOM | P62304 |
| Homologs : HomoloGene | SNRPE |
| Homology/Alignments : Family Browser (UCSC) | SNRPE |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | SNRPE |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | SNRPE [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | SNRPE |
| dbVar | SNRPE |
| ClinVar | SNRPE |
| 1000_Genomes | SNRPE |
| Exome Variant Server | SNRPE |
| ExAC (Exome Aggregation Consortium) | ENSG00000182004 |
| GNOMAD Browser | ENSG00000182004 |
| Varsome Browser | SNRPE |
| Genetic variants : HAPMAP | 6635 |
| Genomic Variants (DGV) | SNRPE [DGVbeta] |
| DECIPHER | SNRPE [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | SNRPE |
| Mutations |
|---|
| ICGC Data Portal | SNRPE |
| TCGA Data Portal | SNRPE |
| Broad Tumor Portal | SNRPE |
| OASIS Portal | SNRPE [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | SNRPE [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | SNRPE |
| Mutations and Diseases : HGMD | SNRPE |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search SNRPE |
| DgiDB (Drug Gene Interaction Database) | SNRPE |
| DoCM (Curated mutations) | SNRPE (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | SNRPE (select a term) |
| intoGen | SNRPE |
| Cancer3D | SNRPE(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 128260 615059 |
| Orphanet | 10760 |
| DisGeNET | SNRPE |
| Medgen | SNRPE |
| Genetic Testing Registry | SNRPE
|
| NextProt | P62304 [Medical] |
| TSGene | 6635 |
| GENETests | SNRPE |
| Target Validation | SNRPE |
| Huge Navigator |
SNRPE [HugePedia] |
| snp3D : Map Gene to Disease | 6635 |
| BioCentury BCIQ | SNRPE |
| ClinGen | SNRPE |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 6635 |
| Chemical/Pharm GKB Gene | PA36002 |
| Clinical trial | SNRPE |
| Miscellaneous |
|---|
| canSAR (ICR) | SNRPE (select the gene name) |
| DataMed Index | SNRPE |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 98 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | SNRPE |
| EVEX | SNRPE |
| GoPubMed | SNRPE |
| iHOP | SNRPE |
