Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNRPE (small nuclear ribonucleoprotein polypeptide E)

Identity

Alias (NCBI)HYPT11
SME
Sm-E
snRNP-E
HGNC (Hugo) SNRPE
HGNC Alias symbSm-E
LocusID (NCBI) 6635
Atlas_Id 50574
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 203861599 and ends at 203871152 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRR11 (17q22)::SNRPE (1q32.1)SNRPE (1q32.1)::PRTFDC1 (10p12.1)SNRPE (1q32.1)::SETBP1 (18q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)SNRPE   11161
Cards
Entrez_Gene (NCBI)SNRPE    small nuclear ribonucleoprotein polypeptide E
AliasesHYPT11; SME; Sm-E; snRNP-E
GeneCards (Weizmann)SNRPE
Ensembl hg19 (Hinxton)ENSG00000182004 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182004 [Gene_View]  ENSG00000182004 [Sequence]  chr1:203861599-203871152 [Contig_View]  SNRPE [Vega]
ICGC DataPortalENSG00000182004
TCGA cBioPortalSNRPE
AceView (NCBI)SNRPE
Genatlas (Paris)SNRPE
SOURCE (Princeton)SNRPE
Genetics Home Reference (NIH)SNRPE
Genomic and cartography
GoldenPath hg38 (UCSC)SNRPE  -     chr1:203861599-203871152 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNRPE  -     1q32.1   [Description]    (hg19-Feb_2009)
GoldenPathSNRPE - 1q32.1 [CytoView hg19]  SNRPE - 1q32.1 [CytoView hg38]
ImmunoBaseENSG00000182004
Genome Data Viewer NCBISNRPE [Mapview hg19]  
OMIM128260   615059   
Gene and transcription
Genbank (Entrez)AA344740 AI263891 AK307255 AK309140 AK312130
RefSeq transcript (Entrez)NM_001304464 NM_001328637 NM_001328638 NM_003094
Consensus coding sequences : CCDS (NCBI)SNRPE
Gene ExpressionSNRPE [ NCBI-GEO ]   SNRPE [ EBI - ARRAY_EXPRESS ]   SNRPE [ SEEK ]   SNRPE [ MEM ]
Gene Expression Viewer (FireBrowse)SNRPE [ Firebrowse - Broad ]
GenevisibleExpression of SNRPE in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6635
GTEX Portal (Tissue expression)SNRPE
Human Protein AtlasENSG00000182004-SNRPE [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62304   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62304  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62304
PhosPhoSitePlusP62304
Domains : Interpro (EBI)LSM_dom_euk/arc    LSM_dom_sf    snRNP-E   
Domain families : Pfam (Sanger)LSM (PF01423)   
Domain families : Pfam (NCBI)pfam01423   
Domain families : Smart (EMBL)Sm (SM00651)  
Conserved Domain (NCBI)SNRPE
PDB (RSDB)3CW1    3JCR    3PGW    4F7U    4PJO    4V98    4WZJ    5MQF    5O9Z    5XJC    5XJL    5XJQ    5XJR    5XJS    5XJT    5XJU    5YZG    5Z56    5Z57    5Z58    6AH0    6FF7    6ICZ    6ID0    6ID1    6QDV    6QW6    6QX9    6V4X    6Y53    6Y5Q    7A5P   
PDB Europe3CW1    3JCR    3PGW    4F7U    4PJO    4V98    4WZJ    5MQF    5O9Z    5XJC    5XJL    5XJQ    5XJR    5XJS    5XJT    5XJU    5YZG    5Z56    5Z57    5Z58    6AH0    6FF7    6ICZ    6ID0    6ID1    6QDV    6QW6    6QX9    6V4X    6Y53    6Y5Q    7A5P   
PDB (PDBSum)3CW1    3JCR    3PGW    4F7U    4PJO    4V98    4WZJ    5MQF    5O9Z    5XJC    5XJL    5XJQ    5XJR    5XJS    5XJT    5XJU    5YZG    5Z56    5Z57    5Z58    6AH0    6FF7    6ICZ    6ID0    6ID1    6QDV    6QW6    6QX9    6V4X    6Y53    6Y5Q    7A5P   
PDB (IMB)3CW1    3JCR    3PGW    4F7U    4PJO    4V98    4WZJ    5MQF    5O9Z    5XJC    5XJL    5XJQ    5XJR    5XJS    5XJT    5XJU    5YZG    5Z56    5Z57    5Z58    6AH0    6FF7    6ICZ    6ID0    6ID1    6QDV    6QW6    6QX9    6V4X    6Y53    6Y5Q    7A5P   
Structural Biology KnowledgeBase3CW1    3JCR    3PGW    4F7U    4PJO    4V98    4WZJ    5MQF    5O9Z    5XJC    5XJL    5XJQ    5XJR    5XJS    5XJT    5XJU    5YZG    5Z56    5Z57    5Z58    6AH0    6FF7    6ICZ    6ID0    6ID1    6QDV    6QW6    6QX9    6V4X    6Y53    6Y5Q    7A5P   
SCOP (Structural Classification of Proteins)3CW1    3JCR    3PGW    4F7U    4PJO    4V98    4WZJ    5MQF    5O9Z    5XJC    5XJL    5XJQ    5XJR    5XJS    5XJT    5XJU    5YZG    5Z56    5Z57    5Z58    6AH0    6FF7    6ICZ    6ID0    6ID1    6QDV    6QW6    6QX9    6V4X    6Y53    6Y5Q    7A5P   
CATH (Classification of proteins structures)3CW1    3JCR    3PGW    4F7U    4PJO    4V98    4WZJ    5MQF    5O9Z    5XJC    5XJL    5XJQ    5XJR    5XJS    5XJT    5XJU    5YZG    5Z56    5Z57    5Z58    6AH0    6FF7    6ICZ    6ID0    6ID1    6QDV    6QW6    6QX9    6V4X    6Y53    6Y5Q    7A5P   
SuperfamilyP62304
AlphaFold pdb e-kbP62304   
Human Protein Atlas [tissue]ENSG00000182004-SNRPE [tissue]
HPRD00548
Protein Interaction databases
DIP (DOE-UCLA)P62304
IntAct (EBI)P62304
BioGRIDSNRPE
STRING (EMBL)SNRPE
ZODIACSNRPE
Ontologies - Pathways
QuickGOP62304
Ontology : AmiGOspliceosomal complex assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  spliceosomal complex  U5 snRNP  U7 snRNP  U1 snRNP  U1 snRNP  U2 snRNP  U4 snRNP  U4 snRNP  U12-type spliceosomal complex  telomerase holoenzyme complex  cytosol  cytosol  small nuclear ribonucleoprotein complex  methylosome  pICln-Sm protein complex  SMN-Sm protein complex  U4/U6 x U5 tri-snRNP complex  U4/U6 x U5 tri-snRNP complex  U2-type precatalytic spliceosome  U2-type catalytic step 2 spliceosome  precatalytic spliceosome  catalytic step 2 spliceosome  
Ontology : EGO-EBIspliceosomal complex assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  spliceosomal complex  U5 snRNP  U7 snRNP  U1 snRNP  U1 snRNP  U2 snRNP  U4 snRNP  U4 snRNP  U12-type spliceosomal complex  telomerase holoenzyme complex  cytosol  cytosol  small nuclear ribonucleoprotein complex  methylosome  pICln-Sm protein complex  SMN-Sm protein complex  U4/U6 x U5 tri-snRNP complex  U4/U6 x U5 tri-snRNP complex  U2-type precatalytic spliceosome  U2-type catalytic step 2 spliceosome  precatalytic spliceosome  catalytic step 2 spliceosome  
Pathways : BIOCARTABIOCARTA_SMPATHWAY   
Pathways : KEGGKEGG_SPLICEOSOME   
NDEx NetworkSNRPE
Atlas of Cancer Signalling NetworkSNRPE
Wikipedia pathwaysSNRPE
Orthology - Evolution
OrthoDB6635
GeneTree (enSembl)ENSG00000182004
Phylogenetic Trees/Animal Genes : TreeFamSNRPE
Homologs : HomoloGeneSNRPE
Homology/Alignments : Family Browser (UCSC)SNRPE
Gene fusions - Rearrangements
Fusion : QuiverSNRPE
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRPE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRPE
dbVarSNRPE
ClinVarSNRPE
MonarchSNRPE
1000_GenomesSNRPE 
Exome Variant ServerSNRPE
GNOMAD BrowserENSG00000182004
Varsome BrowserSNRPE
ACMGSNRPE variants
VarityP62304
Genomic Variants (DGV)SNRPE [DGVbeta]
DECIPHERSNRPE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNRPE 
Mutations
ICGC Data PortalSNRPE 
TCGA Data PortalSNRPE 
Broad Tumor PortalSNRPE
OASIS PortalSNRPE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRPE  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSNRPE
Mutations and Diseases : HGMDSNRPE
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSNRPE
DgiDB (Drug Gene Interaction Database)SNRPE
DoCM (Curated mutations)SNRPE
CIViC (Clinical Interpretations of Variants in Cancer)SNRPE
Cancer3DSNRPE
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM128260    615059   
Orphanet10760   
DisGeNETSNRPE
MedgenSNRPE
Genetic Testing Registry SNRPE
NextProtP62304 [Medical]
GENETestsSNRPE
Target ValidationSNRPE
Huge Navigator SNRPE [HugePedia]
ClinGenSNRPE
Clinical trials, drugs, therapy
MyCancerGenomeSNRPE
Protein Interactions : CTDSNRPE
Pharm GKB GenePA36002
PharosP62304
Clinical trialSNRPE
Miscellaneous
canSAR (ICR)SNRPE
HarmonizomeSNRPE
ARCHS4SNRPE
DataMed IndexSNRPE
Probes
Litterature
PubMed139 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSNRPE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jan 20 13:00:07 CET 2022
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.