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SNRPF (small nuclear ribonucleoprotein polypeptide F)

Identity

Alias_symbol (synonym)Sm-F
Other aliasSMF
snRNP-F
HGNC (Hugo) SNRPF
LocusID (NCBI) 6636
Atlas_Id 74040
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 95858931 and ends at 95866461 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PLCD3 (17q21.31) / SNRPF (12q23.1)SNRPF (12q23.1) / TRIM28 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNRPF   11162
Cards
Entrez_Gene (NCBI)SNRPF  6636  small nuclear ribonucleoprotein polypeptide F
AliasesSMF; Sm-F; snRNP-F
GeneCards (Weizmann)SNRPF
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:95858931-95866461 [Contig_View]  SNRPF [Vega]
TCGA cBioPortalSNRPF
AceView (NCBI)SNRPF
Genatlas (Paris)SNRPF
WikiGenes6636
SOURCE (Princeton)SNRPF
Genetics Home Reference (NIH)SNRPF
Genomic and cartography
GoldenPath hg38 (UCSC)SNRPF  -     chr12:95858931-95866461 +  12q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNRPF  -     12q23.1   [Description]    (hg19-Feb_2009)
EnsemblSNRPF - 12q23.1 [CytoView hg19]  SNRPF - 12q23.1 [CytoView hg38]
Mapping of homologs : NCBISNRPF [Mapview hg19]  SNRPF [Mapview hg38]
OMIM603541   
Gene and transcription
Genbank (Entrez)AK311752 BC002505 BC063397 BC128452 BC128453
RefSeq transcript (Entrez)NM_003095
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNRPF
Cluster EST : UnigeneHs.105465 [ NCBI ]
CGAP (NCI)Hs.105465
Gene ExpressionSNRPF [ NCBI-GEO ]   SNRPF [ EBI - ARRAY_EXPRESS ]   SNRPF [ SEEK ]   SNRPF [ MEM ]
Gene Expression Viewer (FireBrowse)SNRPF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6636
GTEX Portal (Tissue expression)SNRPF
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62306   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62306  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62306
Splice isoforms : SwissVarP62306
PhosPhoSitePlusP62306
Domains : Interpro (EBI)Lsm6/sSmF    LSM_dom    LSM_dom_euk/arc    Sm_F   
Domain families : Pfam (Sanger)LSM (PF01423)   
Domain families : Pfam (NCBI)pfam01423   
Domain families : Smart (EMBL)Sm (SM00651)  
Conserved Domain (NCBI)SNRPF
DMDM Disease mutations6636
Blocks (Seattle)SNRPF
PDB (SRS)3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
PDB (PDBSum)3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
PDB (IMB)3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
PDB (RSDB)3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
Structural Biology KnowledgeBase3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
SCOP (Structural Classification of Proteins)3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
CATH (Classification of proteins structures)3CW1    3JCR    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
SuperfamilyP62306
Peptide AtlasP62306
HPRD04645
IPIIPI00220528   IPI01021534   IPI01021111   
Protein Interaction databases
DIP (DOE-UCLA)P62306
IntAct (EBI)P62306
BioGRIDSNRPF
STRING (EMBL)SNRPF
ZODIACSNRPF
Ontologies - Pathways
QuickGOP62306
Ontology : AmiGOspliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  spliceosomal complex  U7 snRNP  U1 snRNP  U4 snRNP  U12-type spliceosomal complex  small nucleolar ribonucleoprotein complex  cytosol  cytosol  termination of RNA polymerase II transcription  histone mRNA metabolic process  RNA splicing  small nuclear ribonucleoprotein complex  methylosome  pICln-Sm protein complex  SMN-Sm protein complex  nuclear import  catalytic step 2 spliceosome  
Ontology : EGO-EBIspliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  spliceosomal complex  U7 snRNP  U1 snRNP  U4 snRNP  U12-type spliceosomal complex  small nucleolar ribonucleoprotein complex  cytosol  cytosol  termination of RNA polymerase II transcription  histone mRNA metabolic process  RNA splicing  small nuclear ribonucleoprotein complex  methylosome  pICln-Sm protein complex  SMN-Sm protein complex  nuclear import  catalytic step 2 spliceosome  
Pathways : BIOCARTASpliceosomal Assembly [Genes]   
Pathways : KEGGSpliceosome   
NDEx NetworkSNRPF
Atlas of Cancer Signalling NetworkSNRPF
Wikipedia pathwaysSNRPF
Orthology - Evolution
OrthoDB6636
Phylogenetic Trees/Animal Genes : TreeFamSNRPF
HOVERGENP62306
HOGENOMP62306
Homologs : HomoloGeneSNRPF
Homology/Alignments : Family Browser (UCSC)SNRPF
Gene fusions - Rearrangements
Tumor Fusion PortalSNRPF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRPF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRPF
dbVarSNRPF
ClinVarSNRPF
1000_GenomesSNRPF 
Exome Variant ServerSNRPF
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP6636
Genomic Variants (DGV)SNRPF [DGVbeta]
DECIPHERSNRPF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNRPF 
Mutations
ICGC Data PortalSNRPF 
TCGA Data PortalSNRPF 
Broad Tumor PortalSNRPF
OASIS PortalSNRPF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRPF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRPF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRPF
DgiDB (Drug Gene Interaction Database)SNRPF
DoCM (Curated mutations)SNRPF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRPF (select a term)
intoGenSNRPF
Cancer3DSNRPF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603541   
Orphanet
DisGeNETSNRPF
MedgenSNRPF
Genetic Testing Registry SNRPF
NextProtP62306 [Medical]
TSGene6636
GENETestsSNRPF
Target ValidationSNRPF
Huge Navigator SNRPF [HugePedia]
snp3D : Map Gene to Disease6636
BioCentury BCIQSNRPF
ClinGenSNRPF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6636
Chemical/Pharm GKB GenePA36003
Clinical trialSNRPF
Miscellaneous
canSAR (ICR)SNRPF (select the gene name)
Probes
Litterature
PubMed63 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRPF
EVEXSNRPF
GoPubMedSNRPF
iHOPSNRPF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:27:30 CET 2017

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