Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNRPG (small nuclear ribonucleoprotein polypeptide G)

Identity

Alias_symbol (synonym)Sm-G
Other aliasSMG
HGNC (Hugo) SNRPG
LocusID (NCBI) 6637
Atlas_Id 74041
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 70508506 and ends at 70520869 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SNRPG (2p13.3) / NOMO2 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNRPG   11163
Cards
Entrez_Gene (NCBI)SNRPG  6637  small nuclear ribonucleoprotein polypeptide G
AliasesSMG; Sm-G
GeneCards (Weizmann)SNRPG
Ensembl hg19 (Hinxton)ENSG00000143977 [Gene_View]  chr2:70508506-70520869 [Contig_View]  SNRPG [Vega]
Ensembl hg38 (Hinxton)ENSG00000143977 [Gene_View]  chr2:70508506-70520869 [Contig_View]  SNRPG [Vega]
ICGC DataPortalENSG00000143977
TCGA cBioPortalSNRPG
AceView (NCBI)SNRPG
Genatlas (Paris)SNRPG
WikiGenes6637
SOURCE (Princeton)SNRPG
Genetics Home Reference (NIH)SNRPG
Genomic and cartography
GoldenPath hg19 (UCSC)SNRPG  -     chr2:70508506-70520869 -  2p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNRPG  -     2p13.3   [Description]    (hg38-Dec_2013)
EnsemblSNRPG - 2p13.3 [CytoView hg19]  SNRPG - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBISNRPG [Mapview hg19]  SNRPG [Mapview hg38]
OMIM603542   
Gene and transcription
Genbank (Entrez)BC000070 BC022432 BC035103 BC066302 BC070166
RefSeq transcript (Entrez)NM_003096
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)SNRPG
Cluster EST : UnigeneHs.654528 [ NCBI ]
CGAP (NCI)Hs.654528
Alternative Splicing GalleryENSG00000143977
Gene ExpressionSNRPG [ NCBI-GEO ]   SNRPG [ EBI - ARRAY_EXPRESS ]   SNRPG [ SEEK ]   SNRPG [ MEM ]
Gene Expression Viewer (FireBrowse)SNRPG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6637
GTEX Portal (Tissue expression)SNRPG
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62308   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62308  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62308
Splice isoforms : SwissVarP62308
PhosPhoSitePlusP62308
Domains : Interpro (EBI)Lsm7/snRNP-G    LSM_dom    Ribonucl_LSM    Ribonucl_LSM_euk/arc   
Domain families : Pfam (Sanger)LSM (PF01423)   
Domain families : Pfam (NCBI)pfam01423   
Domain families : Smart (EMBL)Sm (SM00651)  
Conserved Domain (NCBI)SNRPG
DMDM Disease mutations6637
Blocks (Seattle)SNRPG
PDB (SRS)3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
PDB (PDBSum)3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
PDB (IMB)3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
PDB (RSDB)3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
Structural Biology KnowledgeBase3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
SCOP (Structural Classification of Proteins)3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
CATH (Classification of proteins structures)3CW1    3PGW    3S6N    4F7U    4PJO    4V98    4WZJ   
SuperfamilyP62308
Human Protein AtlasENSG00000143977
Peptide AtlasP62308
HPRD04646
IPIIPI00016572   IPI00925525   IPI00924895   IPI01015663   
Protein Interaction databases
DIP (DOE-UCLA)P62308
IntAct (EBI)P62308
FunCoupENSG00000143977
BioGRIDSNRPG
STRING (EMBL)SNRPG
ZODIACSNRPG
Ontologies - Pathways
QuickGOP62308
Ontology : AmiGOspliceosomal complex assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  nucleoplasm  spliceosomal complex  U7 snRNP  U1 snRNP  U4 snRNP  U12-type spliceosomal complex  small nucleolar ribonucleoprotein complex  cytosol  cytosol  transcription from RNA polymerase II promoter  termination of RNA polymerase II transcription  histone mRNA metabolic process  RNA splicing  gene expression  small nuclear ribonucleoprotein complex  mRNA 3'-end processing  ncRNA metabolic process  methylosome  SMN-Sm protein complex  poly(A) RNA binding  catalytic step 2 spliceosome  
Ontology : EGO-EBIspliceosomal complex assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  nucleoplasm  spliceosomal complex  U7 snRNP  U1 snRNP  U4 snRNP  U12-type spliceosomal complex  small nucleolar ribonucleoprotein complex  cytosol  cytosol  transcription from RNA polymerase II promoter  termination of RNA polymerase II transcription  histone mRNA metabolic process  RNA splicing  gene expression  small nuclear ribonucleoprotein complex  mRNA 3'-end processing  ncRNA metabolic process  methylosome  SMN-Sm protein complex  poly(A) RNA binding  catalytic step 2 spliceosome  
Pathways : BIOCARTASpliceosomal Assembly [Genes]   
Pathways : KEGGSpliceosome   
NDEx NetworkSNRPG
Atlas of Cancer Signalling NetworkSNRPG
Wikipedia pathwaysSNRPG
Orthology - Evolution
OrthoDB6637
GeneTree (enSembl)ENSG00000143977
Phylogenetic Trees/Animal Genes : TreeFamSNRPG
HOVERGENP62308
HOGENOMP62308
Homologs : HomoloGeneSNRPG
Homology/Alignments : Family Browser (UCSC)SNRPG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNRPG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNRPG
dbVarSNRPG
ClinVarSNRPG
1000_GenomesSNRPG 
Exome Variant ServerSNRPG
ExAC (Exome Aggregation Consortium)SNRPG (select the gene name)
Genetic variants : HAPMAP6637
Genomic Variants (DGV)SNRPG [DGVbeta]
DECIPHER (Syndromes)2:70508506-70520869  ENSG00000143977
CONAN: Copy Number AnalysisSNRPG 
Mutations
ICGC Data PortalSNRPG 
TCGA Data PortalSNRPG 
Broad Tumor PortalSNRPG
OASIS PortalSNRPG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNRPG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNRPG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNRPG
DgiDB (Drug Gene Interaction Database)SNRPG
DoCM (Curated mutations)SNRPG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNRPG (select a term)
intoGenSNRPG
Cancer3DSNRPG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603542   
Orphanet
MedgenSNRPG
Genetic Testing Registry SNRPG
NextProtP62308 [Medical]
TSGene6637
GENETestsSNRPG
Huge Navigator SNRPG [HugePedia]
snp3D : Map Gene to Disease6637
BioCentury BCIQSNRPG
ClinGenSNRPG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6637
Chemical/Pharm GKB GenePA36004
Clinical trialSNRPG
Miscellaneous
canSAR (ICR)SNRPG (select the gene name)
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNRPG
EVEXSNRPG
GoPubMedSNRPG
iHOPSNRPG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:03 CET 2017

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