Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNTG1 (syntrophin gamma 1)

Identity

Alias_symbol (synonym)SYN4
G1SYN
Other alias
HGNC (Hugo) SNTG1
LocusID (NCBI) 54212
Atlas_Id 42346
Location 8q11.21  [Link to chromosome band 8q11]
Location_base_pair Starts at 49909726 and ends at 50796656 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHRAC1 (8q24.3) / SNTG1 (8q11.21)MLLT10 (10p12.31) / SNTG1 (8q11.21)NCOA2 (8q13.3) / SNTG1 (8q11.21)
NEU3 (11q13.4) / SNTG1 (8q11.21)SNTG1 (8q11.21) / ATXN7 (3p14.1)CHRAC1 8q24.3 / SNTG1 8q11.21
MLLT10 10p12.31 / SNTG1 8q11.21NEU3 11q13.4 / SNTG1 8q11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNTG1   13740
Cards
Entrez_Gene (NCBI)SNTG1  54212  syntrophin gamma 1
AliasesG1SYN; SYN4
GeneCards (Weizmann)SNTG1
Ensembl hg19 (Hinxton)ENSG00000147481 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147481 [Gene_View]  chr8:49909726-50796656 [Contig_View]  SNTG1 [Vega]
ICGC DataPortalENSG00000147481
TCGA cBioPortalSNTG1
AceView (NCBI)SNTG1
Genatlas (Paris)SNTG1
WikiGenes54212
SOURCE (Princeton)SNTG1
Genetics Home Reference (NIH)SNTG1
Genomic and cartography
GoldenPath hg38 (UCSC)SNTG1  -     chr8:49909726-50796656 +  8q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNTG1  -     8q11.21   [Description]    (hg19-Feb_2009)
EnsemblSNTG1 - 8q11.21 [CytoView hg19]  SNTG1 - 8q11.21 [CytoView hg38]
Mapping of homologs : NCBISNTG1 [Mapview hg19]  SNTG1 [Mapview hg38]
OMIM608714   
Gene and transcription
Genbank (Entrez)AJ003030 AK314084 AL161971 AM393671 BC075072
RefSeq transcript (Entrez)NM_001287813 NM_001287814 NM_001321773 NM_001321775 NM_001321776 NM_001321777 NM_001321778 NM_018967
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNTG1
Cluster EST : UnigeneHs.591869 [ NCBI ]
CGAP (NCI)Hs.591869
Alternative Splicing GalleryENSG00000147481
Gene ExpressionSNTG1 [ NCBI-GEO ]   SNTG1 [ EBI - ARRAY_EXPRESS ]   SNTG1 [ SEEK ]   SNTG1 [ MEM ]
Gene Expression Viewer (FireBrowse)SNTG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54212
GTEX Portal (Tissue expression)SNTG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSN8
Splice isoforms : SwissVarQ9NSN8
PhosPhoSitePlusQ9NSN8
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)PDZ    PH_dom-like    PH_domain    Syntrophin    Syntrophin_gamma   
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  PH (SM00233)  
Conserved Domain (NCBI)SNTG1
DMDM Disease mutations54212
Blocks (Seattle)SNTG1
SuperfamilyQ9NSN8
Human Protein AtlasENSG00000147481
Peptide AtlasQ9NSN8
HPRD16373
IPIIPI00071897   IPI00216531   IPI00984899   IPI00983096   IPI00981078   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSN8
IntAct (EBI)Q9NSN8
FunCoupENSG00000147481
BioGRIDSNTG1
STRING (EMBL)SNTG1
ZODIACSNTG1
Ontologies - Pathways
QuickGOQ9NSN8
Ontology : AmiGOactin binding  structural molecule activity  nucleus  cytoplasm  cytoskeleton  cell communication  protein C-terminus binding  syntrophin complex  ruffle membrane  
Ontology : EGO-EBIactin binding  structural molecule activity  nucleus  cytoplasm  cytoskeleton  cell communication  protein C-terminus binding  syntrophin complex  ruffle membrane  
NDEx NetworkSNTG1
Atlas of Cancer Signalling NetworkSNTG1
Wikipedia pathwaysSNTG1
Orthology - Evolution
OrthoDB54212
GeneTree (enSembl)ENSG00000147481
Phylogenetic Trees/Animal Genes : TreeFamSNTG1
HOVERGENQ9NSN8
HOGENOMQ9NSN8
Homologs : HomoloGeneSNTG1
Homology/Alignments : Family Browser (UCSC)SNTG1
Gene fusions - Rearrangements
Fusion : MitelmanCHRAC1/SNTG1 [8q24.3/8q11.21]  [t(8;8)(q11;q24)]  
Fusion : MitelmanMLLT10/SNTG1 [10p12.31/8q11.21]  [t(8;10)(q11;p12)]  
Fusion : MitelmanNEU3/SNTG1 [11q13.4/8q11.21]  [t(8;11)(q11;q13)]  
Fusion: TCGACHRAC1 8q24.3 SNTG1 8q11.21 BLCA
Fusion: TCGAMLLT10 10p12.31 SNTG1 8q11.21 BRCA
Fusion: TCGANEU3 11q13.4 SNTG1 8q11.21 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNTG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNTG1
dbVarSNTG1
ClinVarSNTG1
1000_GenomesSNTG1 
Exome Variant ServerSNTG1
ExAC (Exome Aggregation Consortium)SNTG1 (select the gene name)
Genetic variants : HAPMAP54212
Genomic Variants (DGV)SNTG1 [DGVbeta]
DECIPHERSNTG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNTG1 
Mutations
ICGC Data PortalSNTG1 
TCGA Data PortalSNTG1 
Broad Tumor PortalSNTG1
OASIS PortalSNTG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNTG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNTG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNTG1
DgiDB (Drug Gene Interaction Database)SNTG1
DoCM (Curated mutations)SNTG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNTG1 (select a term)
intoGenSNTG1
Cancer3DSNTG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608714   
Orphanet
MedgenSNTG1
Genetic Testing Registry SNTG1
NextProtQ9NSN8 [Medical]
TSGene54212
GENETestsSNTG1
Target ValidationSNTG1
Huge Navigator SNTG1 [HugePedia]
snp3D : Map Gene to Disease54212
BioCentury BCIQSNTG1
ClinGenSNTG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54212
Chemical/Pharm GKB GenePA37806
Clinical trialSNTG1
Miscellaneous
canSAR (ICR)SNTG1 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNTG1
EVEXSNTG1
GoPubMedSNTG1
iHOPSNTG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:15:17 CEST 2017

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