Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNTG2 (syntrophin gamma 2)

Identity

Alias (NCBI)G2SYN
SYN5
HGNC (Hugo) SNTG2
HGNC Alias symbSYN5
G2SYN
LocusID (NCBI) 54221
Atlas_Id 74042
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 950849 and ends at 1367612 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AFF4 (5q31.1) / SNTG2 (2p25.3)ATG9A (2q35) / SNTG2 (2p25.3)SNTG2 (2p25.3) / CCDC88A (2p16.1)
SNTG2 (2p25.3) / GCLM (1p22.1)TGS1 (8q12.1) / SNTG2 (2p25.3)WWC1 (5q34) / SNTG2 (2p25.3)
WWC1 SNTG2AFF4 SNTG2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SNTG2   13741
Cards
Entrez_Gene (NCBI)SNTG2    syntrophin gamma 2
AliasesG2SYN; SYN5
GeneCards (Weizmann)SNTG2
Ensembl hg19 (Hinxton)ENSG00000172554 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172554 [Gene_View]  ENSG00000172554 [Sequence]  chr2:950849-1367612 [Contig_View]  SNTG2 [Vega]
ICGC DataPortalENSG00000172554
TCGA cBioPortalSNTG2
AceView (NCBI)SNTG2
Genatlas (Paris)SNTG2
SOURCE (Princeton)SNTG2
Genetics Home Reference (NIH)SNTG2
Genomic and cartography
GoldenPath hg38 (UCSC)SNTG2  -     chr2:950849-1367612 +  2p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNTG2  -     2p25.3   [Description]    (hg19-Feb_2009)
GoldenPathSNTG2 - 2p25.3 [CytoView hg19]  SNTG2 - 2p25.3 [CytoView hg38]
ImmunoBaseENSG00000172554
Genome Data Viewer NCBISNTG2 [Mapview hg19]  
OMIM608715   
Gene and transcription
Genbank (Entrez)AJ003029 BC035783 BC125251 BG208326
RefSeq transcript (Entrez)NM_018968
Consensus coding sequences : CCDS (NCBI)SNTG2
Gene ExpressionSNTG2 [ NCBI-GEO ]   SNTG2 [ EBI - ARRAY_EXPRESS ]   SNTG2 [ SEEK ]   SNTG2 [ MEM ]
Gene Expression Viewer (FireBrowse)SNTG2 [ Firebrowse - Broad ]
GenevisibleExpression of SNTG2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54221
GTEX Portal (Tissue expression)SNTG2
Human Protein AtlasENSG00000172554-SNTG2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY99
PhosPhoSitePlusQ9NY99
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ    PDZ_sf    Syntrophin   
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)SNTG2
SuperfamilyQ9NY99
AlphaFold pdb e-kbQ9NY99   
Human Protein Atlas [tissue]ENSG00000172554-SNTG2 [tissue]
HPRD16374
Protein Interaction databases
DIP (DOE-UCLA)Q9NY99
IntAct (EBI)Q9NY99
BioGRIDSNTG2
STRING (EMBL)SNTG2
ZODIACSNTG2
Ontologies - Pathways
QuickGOQ9NY99
Ontology : AmiGOactin binding  structural molecule activity  protein binding  intracellular anatomical structure  nucleoplasm  cytoplasm  cytoskeleton  plasma membrane  central nervous system development  dystrophin-associated glycoprotein complex  syntrophin complex  PDZ domain binding  sarcolemma  neuroligin family protein binding  
Ontology : EGO-EBIactin binding  structural molecule activity  protein binding  intracellular anatomical structure  nucleoplasm  cytoplasm  cytoskeleton  plasma membrane  central nervous system development  dystrophin-associated glycoprotein complex  syntrophin complex  PDZ domain binding  sarcolemma  neuroligin family protein binding  
NDEx NetworkSNTG2
Atlas of Cancer Signalling NetworkSNTG2
Wikipedia pathwaysSNTG2
Orthology - Evolution
OrthoDB54221
GeneTree (enSembl)ENSG00000172554
Phylogenetic Trees/Animal Genes : TreeFamSNTG2
Homologs : HomoloGeneSNTG2
Homology/Alignments : Family Browser (UCSC)SNTG2
Gene fusions - Rearrangements
Fusion : QuiverSNTG2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNTG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNTG2
dbVarSNTG2
ClinVarSNTG2
MonarchSNTG2
1000_GenomesSNTG2 
Exome Variant ServerSNTG2
GNOMAD BrowserENSG00000172554
Varsome BrowserSNTG2
ACMGSNTG2 variants
VarityQ9NY99
Genomic Variants (DGV)SNTG2 [DGVbeta]
DECIPHERSNTG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNTG2 
Mutations
ICGC Data PortalSNTG2 
TCGA Data PortalSNTG2 
Broad Tumor PortalSNTG2
OASIS PortalSNTG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNTG2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSNTG2
Mutations and Diseases : HGMDSNTG2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSNTG2
DgiDB (Drug Gene Interaction Database)SNTG2
DoCM (Curated mutations)SNTG2
CIViC (Clinical Interpretations of Variants in Cancer)SNTG2
Cancer3DSNTG2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608715   
Orphanet
DisGeNETSNTG2
MedgenSNTG2
Genetic Testing Registry SNTG2
NextProtQ9NY99 [Medical]
GENETestsSNTG2
Target ValidationSNTG2
Huge Navigator SNTG2 [HugePedia]
ClinGenSNTG2
Clinical trials, drugs, therapy
MyCancerGenomeSNTG2
Protein Interactions : CTDSNTG2
Pharm GKB GenePA37807
PharosQ9NY99
Clinical trialSNTG2
Miscellaneous
canSAR (ICR)SNTG2
HarmonizomeSNTG2
DataMed IndexSNTG2
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSNTG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:23:34 CEST 2021

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