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SNTG2 (syntrophin gamma 2)

Identity

Alias_symbol (synonym)SYN5
G2SYN
Other alias
HGNC (Hugo) SNTG2
LocusID (NCBI) 54221
Atlas_Id 74042
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 950868 and ends at 1367612 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AFF4 (5q31.1) / SNTG2 (2p25.3)ATG9A (2q35) / SNTG2 (2p25.3)SNTG2 (2p25.3) / CCDC88A (2p16.1)
SNTG2 (2p25.3) / GCLM (1p22.1)TGS1 (8q12.1) / SNTG2 (2p25.3)WWC1 (5q34) / SNTG2 (2p25.3)
WWC1 SNTG2AFF4 SNTG2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNTG2   13741
Cards
Entrez_Gene (NCBI)SNTG2  54221  syntrophin gamma 2
AliasesG2SYN; SYN5
GeneCards (Weizmann)SNTG2
Ensembl hg19 (Hinxton)ENSG00000172554 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172554 [Gene_View]  chr2:950868-1367612 [Contig_View]  SNTG2 [Vega]
ICGC DataPortalENSG00000172554
TCGA cBioPortalSNTG2
AceView (NCBI)SNTG2
Genatlas (Paris)SNTG2
WikiGenes54221
SOURCE (Princeton)SNTG2
Genetics Home Reference (NIH)SNTG2
Genomic and cartography
GoldenPath hg38 (UCSC)SNTG2  -     chr2:950868-1367612 +  2p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNTG2  -     2p25.3   [Description]    (hg19-Feb_2009)
EnsemblSNTG2 - 2p25.3 [CytoView hg19]  SNTG2 - 2p25.3 [CytoView hg38]
Mapping of homologs : NCBISNTG2 [Mapview hg19]  SNTG2 [Mapview hg38]
OMIM608715   
Gene and transcription
Genbank (Entrez)AJ003029 BC035783 BC125251 BG208326
RefSeq transcript (Entrez)NM_018968
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_029707 NT_187526 NT_187529
Consensus coding sequences : CCDS (NCBI)SNTG2
Cluster EST : UnigeneHs.595069 [ NCBI ]
CGAP (NCI)Hs.595069
Alternative Splicing GalleryENSG00000172554
Gene ExpressionSNTG2 [ NCBI-GEO ]   SNTG2 [ EBI - ARRAY_EXPRESS ]   SNTG2 [ SEEK ]   SNTG2 [ MEM ]
Gene Expression Viewer (FireBrowse)SNTG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54221
GTEX Portal (Tissue expression)SNTG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY99
Splice isoforms : SwissVarQ9NY99
PhosPhoSitePlusQ9NY99
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ    PH_dom-like    Syntrophin   
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)SNTG2
DMDM Disease mutations54221
Blocks (Seattle)SNTG2
SuperfamilyQ9NY99
Human Protein AtlasENSG00000172554
Peptide AtlasQ9NY99
HPRD16374
IPIIPI00004445   IPI00787982   IPI00893966   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY99
IntAct (EBI)Q9NY99
FunCoupENSG00000172554
BioGRIDSNTG2
STRING (EMBL)SNTG2
ZODIACSNTG2
Ontologies - Pathways
QuickGOQ9NY99
Ontology : AmiGOactin binding  structural molecule activity  cytoplasm  cytoskeleton  central nervous system development  syntrophin complex  PDZ domain binding  sarcolemma  neuroligin family protein binding  
Ontology : EGO-EBIactin binding  structural molecule activity  cytoplasm  cytoskeleton  central nervous system development  syntrophin complex  PDZ domain binding  sarcolemma  neuroligin family protein binding  
NDEx NetworkSNTG2
Atlas of Cancer Signalling NetworkSNTG2
Wikipedia pathwaysSNTG2
Orthology - Evolution
OrthoDB54221
GeneTree (enSembl)ENSG00000172554
Phylogenetic Trees/Animal Genes : TreeFamSNTG2
HOVERGENQ9NY99
HOGENOMQ9NY99
Homologs : HomoloGeneSNTG2
Homology/Alignments : Family Browser (UCSC)SNTG2
Gene fusions - Rearrangements
Fusion: TCGAWWC1 SNTG2
Fusion: TCGAAFF4 SNTG2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNTG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNTG2
dbVarSNTG2
ClinVarSNTG2
1000_GenomesSNTG2 
Exome Variant ServerSNTG2
ExAC (Exome Aggregation Consortium)SNTG2 (select the gene name)
Genetic variants : HAPMAP54221
Genomic Variants (DGV)SNTG2 [DGVbeta]
DECIPHERSNTG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNTG2 
Mutations
ICGC Data PortalSNTG2 
TCGA Data PortalSNTG2 
Broad Tumor PortalSNTG2
OASIS PortalSNTG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNTG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNTG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNTG2
DgiDB (Drug Gene Interaction Database)SNTG2
DoCM (Curated mutations)SNTG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNTG2 (select a term)
intoGenSNTG2
Cancer3DSNTG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608715   
Orphanet
MedgenSNTG2
Genetic Testing Registry SNTG2
NextProtQ9NY99 [Medical]
TSGene54221
GENETestsSNTG2
Target ValidationSNTG2
Huge Navigator SNTG2 [HugePedia]
snp3D : Map Gene to Disease54221
BioCentury BCIQSNTG2
ClinGenSNTG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54221
Chemical/Pharm GKB GenePA37807
Clinical trialSNTG2
Miscellaneous
canSAR (ICR)SNTG2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNTG2
EVEXSNTG2
GoPubMedSNTG2
iHOPSNTG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:43:32 CEST 2017

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