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SNTN (sentan, cilia apical structure protein)

Identity

Alias_symbol (synonym)FLJ44379
S100AL
Other aliasS100A1L
sentan
HGNC (Hugo) SNTN
LocusID (NCBI) 132203
Atlas_Id 74043
Location 3p14.2  [Link to chromosome band 3p14]
Location_base_pair Starts at 63652668 and ends at 63665215 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNTN (3p14.2) / SNTN (3p14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNTN   33706
Cards
Entrez_Gene (NCBI)SNTN  132203  sentan, cilia apical structure protein
AliasesS100A1L; S100AL; sentan
GeneCards (Weizmann)SNTN
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:63652668-63665215 [Contig_View]  SNTN [Vega]
TCGA cBioPortalSNTN
AceView (NCBI)SNTN
Genatlas (Paris)SNTN
WikiGenes132203
SOURCE (Princeton)SNTN
Genetics Home Reference (NIH)SNTN
Genomic and cartography
GoldenPath hg38 (UCSC)SNTN  -     chr3:63652668-63665215 +  3p14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNTN  -     3p14.2   [Description]    (hg19-Feb_2009)
EnsemblSNTN - 3p14.2 [CytoView hg19]  SNTN - 3p14.2 [CytoView hg38]
Mapping of homologs : NCBISNTN [Mapview hg19]  SNTN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126350 BR000723
RefSeq transcript (Entrez)NM_001080537 NM_001348756
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNTN
Cluster EST : UnigeneHs.130704 [ NCBI ]
CGAP (NCI)Hs.130704
Gene ExpressionSNTN [ NCBI-GEO ]   SNTN [ EBI - ARRAY_EXPRESS ]   SNTN [ SEEK ]   SNTN [ MEM ]
Gene Expression Viewer (FireBrowse)SNTN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132203
GTEX Portal (Tissue expression)SNTN
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMZ2
Splice isoforms : SwissVarA6NMZ2
PhosPhoSitePlusA6NMZ2
Domains : Interpro (EBI)EF-hand-dom_pair    S-100_dom    S100_Ca-bd_sub    Sentan   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)S_100 (SM01394)  
Conserved Domain (NCBI)SNTN
DMDM Disease mutations132203
Blocks (Seattle)SNTN
SuperfamilyA6NMZ2
Peptide AtlasA6NMZ2
IPIIPI00218583   IPI00945008   IPI00945577   
Protein Interaction databases
DIP (DOE-UCLA)A6NMZ2
IntAct (EBI)A6NMZ2
BioGRIDSNTN
STRING (EMBL)SNTN
ZODIACSNTN
Ontologies - Pathways
QuickGOA6NMZ2
Ontology : AmiGOcilium  transition metal ion binding  
Ontology : EGO-EBIcilium  transition metal ion binding  
NDEx NetworkSNTN
Atlas of Cancer Signalling NetworkSNTN
Wikipedia pathwaysSNTN
Orthology - Evolution
OrthoDB132203
Phylogenetic Trees/Animal Genes : TreeFamSNTN
HOVERGENA6NMZ2
HOGENOMA6NMZ2
Homologs : HomoloGeneSNTN
Homology/Alignments : Family Browser (UCSC)SNTN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNTN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNTN
dbVarSNTN
ClinVarSNTN
1000_GenomesSNTN 
Exome Variant ServerSNTN
ExAC (Exome Aggregation Consortium)SNTN (select the gene name)
Genetic variants : HAPMAP132203
Genomic Variants (DGV)SNTN [DGVbeta]
DECIPHERSNTN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNTN 
Mutations
ICGC Data PortalSNTN 
TCGA Data PortalSNTN 
Broad Tumor PortalSNTN
OASIS PortalSNTN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNTN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNTN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNTN
DgiDB (Drug Gene Interaction Database)SNTN
DoCM (Curated mutations)SNTN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNTN (select a term)
intoGenSNTN
Cancer3DSNTN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNTN
Genetic Testing Registry SNTN
NextProtA6NMZ2 [Medical]
TSGene132203
GENETestsSNTN
Target ValidationSNTN
Huge Navigator SNTN [HugePedia]
snp3D : Map Gene to Disease132203
BioCentury BCIQSNTN
ClinGenSNTN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132203
Chemical/Pharm GKB GenePA164726205
Clinical trialSNTN
Miscellaneous
canSAR (ICR)SNTN (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNTN
EVEXSNTN
GoPubMedSNTN
iHOPSNTN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:32 CEST 2017

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