Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNU13 (SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5))

Identity

Alias_namesSSFA1
NHP2L1
non-histone chromosome protein 2 (S. cerevisiae)-like 1
sperm specific antigen 1
NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)
Alias_symbol (synonym)FA-1
SPAG12
SNRNP15-5
15.5K
Other aliasFA1
NHPX
OTK27
HGNC (Hugo) SNU13
LocusID (NCBI) 4809
Atlas_Id 77775
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 42069937 and ends at 42084913 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANKLE2 (12q24.33) / SNU13 (22q13.2)PPP2R1B (11q23.1) / SNU13 (22q13.2)SNU13 (22q13.2) / HNRNPD (4q21.22)
SNU13 (22q13.2) / RARA (17q21.2)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SNU13   7819
LRG (Locus Reference Genomic)LRG_1102
Cards
Entrez_Gene (NCBI)SNU13  4809  SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)
Aliases15.5K; FA-1; FA1; NHP2L1; 
NHPX; OTK27; SNRNP15-5; SPAG12; SSFA1
GeneCards (Weizmann)SNU13
Ensembl hg19 (Hinxton)ENSG00000100138 [Gene_View]  chr22:42069937-42084913 [Contig_View]  SNU13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000100138 [Gene_View]  chr22:42069937-42084913 [Contig_View]  SNU13 [Vega]
ICGC DataPortalENSG00000100138
TCGA cBioPortalSNU13
AceView (NCBI)SNU13
Genatlas (Paris)SNU13
WikiGenes4809
SOURCE (Princeton)SNU13
Genetics Home Reference (NIH)SNU13
Genomic and cartography
GoldenPath hg19 (UCSC)SNU13  -     chr22:42069937-42084913 -  22q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNU13  -     22q13.2   [Description]    (hg38-Dec_2013)
EnsemblSNU13 - 22q13.2 [CytoView hg19]  SNU13 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBISNU13 [Mapview hg19]  SNU13 [Mapview hg38]
OMIM601304   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001003796 NM_005008
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)SNU13
Cluster EST : UnigeneHs.182255 [ NCBI ]
CGAP (NCI)Hs.182255
Alternative Splicing GalleryENSG00000100138
Gene ExpressionSNU13 [ NCBI-GEO ]   SNU13 [ EBI - ARRAY_EXPRESS ]   SNU13 [ SEEK ]   SNU13 [ MEM ]
Gene Expression Viewer (FireBrowse)SNU13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)4809
GTEX Portal (Tissue expression)SNU13
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNU13
DMDM Disease mutations4809
Blocks (Seattle)SNU13
Human Protein AtlasENSG00000100138
HPRD03197
IPIIPI00026167   IPI00893746   
Protein Interaction databases
FunCoupENSG00000100138
BioGRIDSNU13
STRING (EMBL)SNU13
ZODIACSNU13
Ontologies - Pathways
Huge Navigator SNU13 [HugePedia]
snp3D : Map Gene to Disease4809
BioCentury BCIQSNU13
ClinGenSNU13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4809
Chemical/Pharm GKB GenePA31621
Clinical trialSNU13
Miscellaneous
canSAR (ICR)SNU13 (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNU13
EVEXSNU13
GoPubMedSNU13
iHOPSNU13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:46:03 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.