Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNU13 (small nuclear ribonucleoprotein 13)

Identity

Alias_namesSSFA1
NHP2L1
non-histone chromosome protein 2 (S. cerevisiae)-like 1
sperm specific antigen 1
NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)
Alias_symbol (synonym)FA-1
SPAG12
SNRNP15-5
15.5K
Other aliasFA1
NHPX
OTK27
HGNC (Hugo) SNU13
LocusID (NCBI) 4809
Atlas_Id 77775
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41673933 and ends at 41688909 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKLE2 (12q24.33) / SNU13 (22q13.2)PPP2R1B (11q23.1) / SNU13 (22q13.2)SNU13 (22q13.2) / HNRNPD (4q21.22)
SNU13 (22q13.2) / RARA (17q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNU13   7819
LRG (Locus Reference Genomic)LRG_1102
Cards
Entrez_Gene (NCBI)SNU13  4809  small nuclear ribonucleoprotein 13
Aliases15.5K; FA-1; FA1; NHP2L1; 
NHPX; OTK27; SNRNP15-5; SPAG12; SSFA1
GeneCards (Weizmann)SNU13
Ensembl hg19 (Hinxton)ENSG00000100138 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100138 [Gene_View]  chr22:41673933-41688909 [Contig_View]  SNU13 [Vega]
ICGC DataPortalENSG00000100138
TCGA cBioPortalSNU13
AceView (NCBI)SNU13
Genatlas (Paris)SNU13
WikiGenes4809
SOURCE (Princeton)SNU13
Genetics Home Reference (NIH)SNU13
Genomic and cartography
GoldenPath hg38 (UCSC)SNU13  -     chr22:41673933-41688909 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNU13  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblSNU13 - 22q13.2 [CytoView hg19]  SNU13 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBISNU13 [Mapview hg19]  SNU13 [Mapview hg38]
OMIM601304   
Gene and transcription
Genbank (Entrez)AF091076 AF155235 AK124020 AK311800 BC005358
RefSeq transcript (Entrez)NM_001003796 NM_005008
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNU13
Cluster EST : UnigeneHs.182255 [ NCBI ]
CGAP (NCI)Hs.182255
Alternative Splicing GalleryENSG00000100138
Gene ExpressionSNU13 [ NCBI-GEO ]   SNU13 [ EBI - ARRAY_EXPRESS ]   SNU13 [ SEEK ]   SNU13 [ MEM ]
Gene Expression Viewer (FireBrowse)SNU13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4809
GTEX Portal (Tissue expression)SNU13
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55769   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP55769  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP55769
Splice isoforms : SwissVarP55769
PhosPhoSitePlusP55769
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L7AE (PS01082)   
Domains : Interpro (EBI)H/ACA_rnp_Nhp2_euk    L30e-like    Ribosomal_L7Ae/L30e/S12e/Gad45    Ribosomal_L7Ae/L8/Nhp2    Ribosomal_L7Ae_CS   
Domain families : Pfam (Sanger)Ribosomal_L7Ae (PF01248)   
Domain families : Pfam (NCBI)pfam01248   
Conserved Domain (NCBI)SNU13
DMDM Disease mutations4809
Blocks (Seattle)SNU13
PDB (SRS)1E7K    2JNB    2OZB    3JCR    3SIU    3SIV   
PDB (PDBSum)1E7K    2JNB    2OZB    3JCR    3SIU    3SIV   
PDB (IMB)1E7K    2JNB    2OZB    3JCR    3SIU    3SIV   
PDB (RSDB)1E7K    2JNB    2OZB    3JCR    3SIU    3SIV   
Structural Biology KnowledgeBase1E7K    2JNB    2OZB    3JCR    3SIU    3SIV   
SCOP (Structural Classification of Proteins)1E7K    2JNB    2OZB    3JCR    3SIU    3SIV   
CATH (Classification of proteins structures)1E7K    2JNB    2OZB    3JCR    3SIU    3SIV   
SuperfamilyP55769
Human Protein AtlasENSG00000100138
Peptide AtlasP55769
HPRD03197
IPIIPI00026167   IPI00893746   
Protein Interaction databases
DIP (DOE-UCLA)P55769
IntAct (EBI)P55769
FunCoupENSG00000100138
BioGRIDSNU13
STRING (EMBL)SNU13
ZODIACSNU13
Ontologies - Pathways
QuickGOP55769
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  maturation of LSU-rRNA  box C/D snoRNP assembly  dense fibrillar component  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  rRNA processing  translation  single fertilization  cytosolic large ribosomal subunit  maturation of SSU-rRNA  snoRNA binding  U4 snRNA binding  U4atac snRNA binding  box C/D snoRNP complex  box C/D snoRNP complex  small-subunit processome  U3 snoRNA binding  box C/D snoRNA binding  protein complex  U4/U6 x U5 tri-snRNP complex  ATPase binding  precatalytic spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  maturation of LSU-rRNA  box C/D snoRNP assembly  dense fibrillar component  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  rRNA processing  translation  single fertilization  cytosolic large ribosomal subunit  maturation of SSU-rRNA  snoRNA binding  U4 snRNA binding  U4atac snRNA binding  box C/D snoRNP complex  box C/D snoRNP complex  small-subunit processome  U3 snoRNA binding  box C/D snoRNA binding  protein complex  U4/U6 x U5 tri-snRNP complex  ATPase binding  precatalytic spliceosome  
NDEx NetworkSNU13
Atlas of Cancer Signalling NetworkSNU13
Wikipedia pathwaysSNU13
Orthology - Evolution
OrthoDB4809
GeneTree (enSembl)ENSG00000100138
Phylogenetic Trees/Animal Genes : TreeFamSNU13
HOVERGENP55769
HOGENOMP55769
Homologs : HomoloGeneSNU13
Homology/Alignments : Family Browser (UCSC)SNU13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNU13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNU13
dbVarSNU13
ClinVarSNU13
1000_GenomesSNU13 
Exome Variant ServerSNU13
ExAC (Exome Aggregation Consortium)SNU13 (select the gene name)
Genetic variants : HAPMAP4809
Genomic Variants (DGV)SNU13 [DGVbeta]
DECIPHERSNU13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNU13 
Mutations
ICGC Data PortalSNU13 
TCGA Data PortalSNU13 
Broad Tumor PortalSNU13
OASIS PortalSNU13 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSNU13
BioMutasearch SNU13
DgiDB (Drug Gene Interaction Database)SNU13
DoCM (Curated mutations)SNU13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNU13 (select a term)
intoGenSNU13
Cancer3DSNU13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601304   
Orphanet
MedgenSNU13
Genetic Testing Registry SNU13
NextProtP55769 [Medical]
TSGene4809
GENETestsSNU13
Target ValidationSNU13
Huge Navigator SNU13 [HugePedia]
snp3D : Map Gene to Disease4809
BioCentury BCIQSNU13
ClinGenSNU13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4809
Chemical/Pharm GKB GenePA31621
Clinical trialSNU13
Miscellaneous
canSAR (ICR)SNU13 (select the gene name)
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNU13
EVEXSNU13
GoPubMedSNU13
iHOPSNU13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:02 CEST 2017

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