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SNUPN (snurportin 1)

Identity

Alias_namesRNUT1
RNA, U transporter 1
Alias_symbol (synonym)SNURPORTIN-1
Snurportin1
Other aliasKPNBL
HGNC (Hugo) SNUPN
LocusID (NCBI) 10073
Atlas_Id 74044
Location 15q24.2  [Link to chromosome band 15q24]
Location_base_pair Starts at 75598083 and ends at 75626105 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNUPN (15q24.2) / ATIC (2q35)SNUPN (15q24.2) / ZNF233 (19q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNUPN   14245
Cards
Entrez_Gene (NCBI)SNUPN  10073  snurportin 1
AliasesKPNBL; RNUT1; Snurportin1
GeneCards (Weizmann)SNUPN
Ensembl hg19 (Hinxton)ENSG00000169371 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169371 [Gene_View]  chr15:75598083-75626105 [Contig_View]  SNUPN [Vega]
ICGC DataPortalENSG00000169371
TCGA cBioPortalSNUPN
AceView (NCBI)SNUPN
Genatlas (Paris)SNUPN
WikiGenes10073
SOURCE (Princeton)SNUPN
Genetics Home Reference (NIH)SNUPN
Genomic and cartography
GoldenPath hg38 (UCSC)SNUPN  -     chr15:75598083-75626105 -  15q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNUPN  -     15q24.2   [Description]    (hg19-Feb_2009)
EnsemblSNUPN - 15q24.2 [CytoView hg19]  SNUPN - 15q24.2 [CytoView hg38]
Mapping of homologs : NCBISNUPN [Mapview hg19]  SNUPN [Mapview hg38]
OMIM607902   
Gene and transcription
Genbank (Entrez)AF039029 AK054641 AK289475 BC004203 BU945130
RefSeq transcript (Entrez)NM_001042581 NM_001042588 NM_005701
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNUPN
Cluster EST : UnigeneHs.21577 [ NCBI ]
CGAP (NCI)Hs.21577
Alternative Splicing GalleryENSG00000169371
Gene ExpressionSNUPN [ NCBI-GEO ]   SNUPN [ EBI - ARRAY_EXPRESS ]   SNUPN [ SEEK ]   SNUPN [ MEM ]
Gene Expression Viewer (FireBrowse)SNUPN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10073
GTEX Portal (Tissue expression)SNUPN
Human Protein AtlasENSG00000169371-SNUPN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95149   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95149  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95149
Splice isoforms : SwissVarO95149
PhosPhoSitePlusO95149
Domaine pattern : Prosite (Expaxy)IBB (PS51214)   
Domains : Interpro (EBI)Importin-a_IBB    Snurportin-1    Snurportin-1_N   
Domain families : Pfam (Sanger)Snurportin1 (PF11538)   
Domain families : Pfam (NCBI)pfam11538   
Conserved Domain (NCBI)SNUPN
DMDM Disease mutations10073
Blocks (Seattle)SNUPN
PDB (SRS)1XK5    2P8Q    2Q5D    2QNA    3GB8    3GJX    3LWW    3NBY    3NBZ    3NC0    5DIS   
PDB (PDBSum)1XK5    2P8Q    2Q5D    2QNA    3GB8    3GJX    3LWW    3NBY    3NBZ    3NC0    5DIS   
PDB (IMB)1XK5    2P8Q    2Q5D    2QNA    3GB8    3GJX    3LWW    3NBY    3NBZ    3NC0    5DIS   
PDB (RSDB)1XK5    2P8Q    2Q5D    2QNA    3GB8    3GJX    3LWW    3NBY    3NBZ    3NC0    5DIS   
Structural Biology KnowledgeBase1XK5    2P8Q    2Q5D    2QNA    3GB8    3GJX    3LWW    3NBY    3NBZ    3NC0    5DIS   
SCOP (Structural Classification of Proteins)1XK5    2P8Q    2Q5D    2QNA    3GB8    3GJX    3LWW    3NBY    3NBZ    3NC0    5DIS   
CATH (Classification of proteins structures)1XK5    2P8Q    2Q5D    2QNA    3GB8    3GJX    3LWW    3NBY    3NBZ    3NC0    5DIS   
SuperfamilyO95149
Human Protein Atlas [tissue]ENSG00000169371-SNUPN [tissue]
Peptide AtlasO95149
HPRD07441
IPIIPI00939743   IPI00024299   
Protein Interaction databases
DIP (DOE-UCLA)O95149
IntAct (EBI)O95149
FunCoupENSG00000169371
BioGRIDSNUPN
STRING (EMBL)SNUPN
ZODIACSNUPN
Ontologies - Pathways
QuickGOO95149
Ontology : AmiGORNA cap binding  spliceosomal snRNP assembly  nuclear pore  cytosol  protein import into nucleus  protein transporter activity  nuclear import  snRNA import into nucleus  extracellular exosome  
Ontology : EGO-EBIRNA cap binding  spliceosomal snRNP assembly  nuclear pore  cytosol  protein import into nucleus  protein transporter activity  nuclear import  snRNA import into nucleus  extracellular exosome  
Pathways : KEGGRNA transport   
NDEx NetworkSNUPN
Atlas of Cancer Signalling NetworkSNUPN
Wikipedia pathwaysSNUPN
Orthology - Evolution
OrthoDB10073
GeneTree (enSembl)ENSG00000169371
Phylogenetic Trees/Animal Genes : TreeFamSNUPN
HOVERGENO95149
HOGENOMO95149
Homologs : HomoloGeneSNUPN
Homology/Alignments : Family Browser (UCSC)SNUPN
Gene fusions - Rearrangements
Fusion: Tumor Portal SNUPN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNUPN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNUPN
dbVarSNUPN
ClinVarSNUPN
1000_GenomesSNUPN 
Exome Variant ServerSNUPN
ExAC (Exome Aggregation Consortium)ENSG00000169371
GNOMAD BrowserENSG00000169371
Genetic variants : HAPMAP10073
Genomic Variants (DGV)SNUPN [DGVbeta]
DECIPHERSNUPN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNUPN 
Mutations
ICGC Data PortalSNUPN 
TCGA Data PortalSNUPN 
Broad Tumor PortalSNUPN
OASIS PortalSNUPN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNUPN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNUPN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNUPN
DgiDB (Drug Gene Interaction Database)SNUPN
DoCM (Curated mutations)SNUPN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNUPN (select a term)
intoGenSNUPN
Cancer3DSNUPN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607902   
Orphanet
MedgenSNUPN
Genetic Testing Registry SNUPN
NextProtO95149 [Medical]
TSGene10073
GENETestsSNUPN
Target ValidationSNUPN
Huge Navigator SNUPN [HugePedia]
snp3D : Map Gene to Disease10073
BioCentury BCIQSNUPN
ClinGenSNUPN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10073
Chemical/Pharm GKB GenePA34611
Clinical trialSNUPN
Miscellaneous
canSAR (ICR)SNUPN (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNUPN
EVEXSNUPN
GoPubMedSNUPN
iHOPSNUPN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:30:20 CET 2017

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