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SNURF (SNRPN upstream reading frame)

Identity

Other alias-
HGNC (Hugo) SNURF
LocusID (NCBI) 8926
Atlas_Id 42347
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 24954893 and ends at 24978723 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNURF   11171
Cards
Entrez_Gene (NCBI)SNURF  8926  SNRPN upstream reading frame
Aliases
GeneCards (Weizmann)SNURF
Ensembl hg19 (Hinxton)ENSG00000214265 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214265 [Gene_View]  chr15:24954893-24978723 [Contig_View]  SNURF [Vega]
ICGC DataPortalENSG00000214265
TCGA cBioPortalSNURF
AceView (NCBI)SNURF
Genatlas (Paris)SNURF
WikiGenes8926
SOURCE (Princeton)SNURF
Genetics Home Reference (NIH)SNURF
Genomic and cartography
GoldenPath hg38 (UCSC)SNURF  -     chr15:24954893-24978723 +  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNURF  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblSNURF - 15q11.2 [CytoView hg19]  SNURF - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBISNURF [Mapview hg19]  SNURF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF101044 AI017249 AK098563 AW451120 DA134019
RefSeq transcript (Entrez)NM_005678 NM_022804
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNURF
Cluster EST : UnigeneHs.564847 [ NCBI ]
CGAP (NCI)Hs.564847
Alternative Splicing GalleryENSG00000214265
Gene ExpressionSNURF [ NCBI-GEO ]   SNURF [ EBI - ARRAY_EXPRESS ]   SNURF [ SEEK ]   SNURF [ MEM ]
Gene Expression Viewer (FireBrowse)SNURF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8926
GTEX Portal (Tissue expression)SNURF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y675   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y675  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y675
Splice isoforms : SwissVarQ9Y675
PhosPhoSitePlusQ9Y675
Domains : Interpro (EBI)SNURF   
Domain families : Pfam (Sanger)SNURF (PF07192)   
Domain families : Pfam (NCBI)pfam07192   
Conserved Domain (NCBI)SNURF
DMDM Disease mutations8926
Blocks (Seattle)SNURF
SuperfamilyQ9Y675
Human Protein AtlasENSG00000214265
Peptide AtlasQ9Y675
HPRD18083
IPIIPI00024246   IPI01025020   IPI00028156   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y675
IntAct (EBI)Q9Y675
FunCoupENSG00000214265
BioGRIDSNURF
STRING (EMBL)SNURF
ZODIACSNURF
Ontologies - Pathways
QuickGOQ9Y675
Ontology : AmiGOmolecular_function  nucleus  biological_process  nuclear speck  
Ontology : EGO-EBImolecular_function  nucleus  biological_process  nuclear speck  
NDEx NetworkSNURF
Atlas of Cancer Signalling NetworkSNURF
Wikipedia pathwaysSNURF
Orthology - Evolution
OrthoDB8926
GeneTree (enSembl)ENSG00000214265
Phylogenetic Trees/Animal Genes : TreeFamSNURF
HOVERGENQ9Y675
HOGENOMQ9Y675
Homologs : HomoloGeneSNURF
Homology/Alignments : Family Browser (UCSC)SNURF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNURF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNURF
dbVarSNURF
ClinVarSNURF
1000_GenomesSNURF 
Exome Variant ServerSNURF
ExAC (Exome Aggregation Consortium)SNURF (select the gene name)
Genetic variants : HAPMAP8926
Genomic Variants (DGV)SNURF [DGVbeta]
DECIPHERSNURF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNURF 
Mutations
ICGC Data PortalSNURF 
TCGA Data PortalSNURF 
Broad Tumor PortalSNURF
OASIS PortalSNURF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNURF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNURF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNURF
DgiDB (Drug Gene Interaction Database)SNURF
DoCM (Curated mutations)SNURF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNURF (select a term)
intoGenSNURF
Cancer3DSNURF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNURF
Genetic Testing Registry SNURF
NextProtQ9Y675 [Medical]
TSGene8926
GENETestsSNURF
Target ValidationSNURF
Huge Navigator SNURF [HugePedia]
snp3D : Map Gene to Disease8926
BioCentury BCIQSNURF
ClinGenSNURF (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8926
Chemical/Pharm GKB GenePA36010
Clinical trialSNURF
Miscellaneous
canSAR (ICR)SNURF (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNURF
EVEXSNURF
GoPubMedSNURF
iHOPSNURF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:56:47 CEST 2017

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