Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNX11 (sorting nexin 11)

Identity

Other alias-
HGNC (Hugo) SNX11
LocusID (NCBI) 29916
Atlas_Id 74045
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 48107533 and ends at 48123601 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RACK1 (5q35.3) / SNX11 (17q21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX11   14975
Cards
Entrez_Gene (NCBI)SNX11  29916  sorting nexin 11
Aliases
GeneCards (Weizmann)SNX11
Ensembl hg19 (Hinxton)ENSG00000002919 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000002919 [Gene_View]  chr17:48107533-48123601 [Contig_View]  SNX11 [Vega]
ICGC DataPortalENSG00000002919
TCGA cBioPortalSNX11
AceView (NCBI)SNX11
Genatlas (Paris)SNX11
WikiGenes29916
SOURCE (Princeton)SNX11
Genetics Home Reference (NIH)SNX11
Genomic and cartography
GoldenPath hg38 (UCSC)SNX11  -     chr17:48107533-48123601 +  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX11  -     17q21.32   [Description]    (hg19-Feb_2009)
EnsemblSNX11 - 17q21.32 [CytoView hg19]  SNX11 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBISNX11 [Mapview hg19]  SNX11 [Mapview hg38]
OMIM614906   
Gene and transcription
Genbank (Entrez)AF121861 AK023932 AK091852 AK296095 AK296569
RefSeq transcript (Entrez)NM_001330320 NM_013323 NM_152244
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX11
Cluster EST : UnigeneHs.15827 [ NCBI ]
CGAP (NCI)Hs.15827
Alternative Splicing GalleryENSG00000002919
Gene ExpressionSNX11 [ NCBI-GEO ]   SNX11 [ EBI - ARRAY_EXPRESS ]   SNX11 [ SEEK ]   SNX11 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29916
GTEX Portal (Tissue expression)SNX11
Human Protein AtlasENSG00000002919-SNX11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5W9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5W9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5W9
Splice isoforms : SwissVarQ9Y5W9
PhosPhoSitePlusQ9Y5W9
Domaine pattern : Prosite (Expaxy)PX (PS50195)   
Domains : Interpro (EBI)Phox    SNX11   
Domain families : Pfam (Sanger)PX (PF00787)   
Domain families : Pfam (NCBI)pfam00787   
Domain families : Smart (EMBL)PX (SM00312)  
Conserved Domain (NCBI)SNX11
DMDM Disease mutations29916
Blocks (Seattle)SNX11
PDB (SRS)4IKB    4IKD   
PDB (PDBSum)4IKB    4IKD   
PDB (IMB)4IKB    4IKD   
PDB (RSDB)4IKB    4IKD   
Structural Biology KnowledgeBase4IKB    4IKD   
SCOP (Structural Classification of Proteins)4IKB    4IKD   
CATH (Classification of proteins structures)4IKB    4IKD   
SuperfamilyQ9Y5W9
Human Protein Atlas [tissue]ENSG00000002919-SNX11 [tissue]
Peptide AtlasQ9Y5W9
HPRD15410
IPIIPI00001867   IPI01010236   IPI00794011   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5W9
IntAct (EBI)Q9Y5W9
FunCoupENSG00000002919
BioGRIDSNX11
STRING (EMBL)SNX11
ZODIACSNX11
Ontologies - Pathways
QuickGOQ9Y5W9
Ontology : AmiGOprotein binding  endosome  intracellular protein transport  endocytosis  vesicle organization  extrinsic component of membrane  phosphatidylinositol phosphate binding  
Ontology : EGO-EBIprotein binding  endosome  intracellular protein transport  endocytosis  vesicle organization  extrinsic component of membrane  phosphatidylinositol phosphate binding  
NDEx NetworkSNX11
Atlas of Cancer Signalling NetworkSNX11
Wikipedia pathwaysSNX11
Orthology - Evolution
OrthoDB29916
GeneTree (enSembl)ENSG00000002919
Phylogenetic Trees/Animal Genes : TreeFamSNX11
HOVERGENQ9Y5W9
HOGENOMQ9Y5W9
Homologs : HomoloGeneSNX11
Homology/Alignments : Family Browser (UCSC)SNX11
Gene fusions - Rearrangements
Fusion: Tumor Portal SNX11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX11
dbVarSNX11
ClinVarSNX11
1000_GenomesSNX11 
Exome Variant ServerSNX11
ExAC (Exome Aggregation Consortium)ENSG00000002919
GNOMAD BrowserENSG00000002919
Genetic variants : HAPMAP29916
Genomic Variants (DGV)SNX11 [DGVbeta]
DECIPHERSNX11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX11 
Mutations
ICGC Data PortalSNX11 
TCGA Data PortalSNX11 
Broad Tumor PortalSNX11
OASIS PortalSNX11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX11
DgiDB (Drug Gene Interaction Database)SNX11
DoCM (Curated mutations)SNX11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX11 (select a term)
intoGenSNX11
Cancer3DSNX11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614906   
Orphanet
MedgenSNX11
Genetic Testing Registry SNX11
NextProtQ9Y5W9 [Medical]
TSGene29916
GENETestsSNX11
Target ValidationSNX11
Huge Navigator SNX11 [HugePedia]
snp3D : Map Gene to Disease29916
BioCentury BCIQSNX11
ClinGenSNX11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29916
Chemical/Pharm GKB GenePA37951
Clinical trialSNX11
Miscellaneous
canSAR (ICR)SNX11 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX11
EVEXSNX11
GoPubMedSNX11
iHOPSNX11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:30:21 CET 2017

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