Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNX13 (sorting nexin 13)

Identity

Alias_symbol (synonym)RGS-PX1
KIAA0713
Other alias
HGNC (Hugo) SNX13
LocusID (NCBI) 23161
Atlas_Id 74047
Location 7p21.1  [Link to chromosome band 7p21]
Location_base_pair Starts at 17790761 and ends at 17940508 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
JAZF1 (7p15.2) / SNX13 (7p21.1)SNX13 (7p21.1) / STAP2 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX13   21335
Cards
Entrez_Gene (NCBI)SNX13  23161  sorting nexin 13
AliasesRGS-PX1
GeneCards (Weizmann)SNX13
Ensembl hg19 (Hinxton)ENSG00000071189 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000071189 [Gene_View]  chr7:17790761-17940508 [Contig_View]  SNX13 [Vega]
ICGC DataPortalENSG00000071189
TCGA cBioPortalSNX13
AceView (NCBI)SNX13
Genatlas (Paris)SNX13
WikiGenes23161
SOURCE (Princeton)SNX13
Genetics Home Reference (NIH)SNX13
Genomic and cartography
GoldenPath hg38 (UCSC)SNX13  -     chr7:17790761-17940508 -  7p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX13  -     7p21.1   [Description]    (hg19-Feb_2009)
EnsemblSNX13 - 7p21.1 [CytoView hg19]  SNX13 - 7p21.1 [CytoView hg38]
Mapping of homologs : NCBISNX13 [Mapview hg19]  SNX13 [Mapview hg38]
OMIM606589   
Gene and transcription
Genbank (Entrez)AB018256 AF121862 AF420470 AK001861 AK023740
RefSeq transcript (Entrez)NM_001350862 NM_001350863 NM_001350864 NM_001350865 NM_001350866 NM_001350867 NM_001350868 NM_001350870 NM_015132
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX13
Cluster EST : UnigeneHs.487648 [ NCBI ]
CGAP (NCI)Hs.487648
Alternative Splicing GalleryENSG00000071189
Gene ExpressionSNX13 [ NCBI-GEO ]   SNX13 [ EBI - ARRAY_EXPRESS ]   SNX13 [ SEEK ]   SNX13 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23161
GTEX Portal (Tissue expression)SNX13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5W8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5W8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5W8
Splice isoforms : SwissVarQ9Y5W8
PhosPhoSitePlusQ9Y5W8
Domaine pattern : Prosite (Expaxy)PX (PS50195)    PXA (PS51207)    RGS (PS50132)   
Domains : Interpro (EBI)Phox    Phox_assoc    RGS    Sorting_nexin_C   
Domain families : Pfam (Sanger)Nexin_C (PF08628)    PX (PF00787)    PXA (PF02194)    RGS (PF00615)   
Domain families : Pfam (NCBI)pfam08628    pfam00787    pfam02194    pfam00615   
Domain families : Smart (EMBL)PX (SM00312)  PXA (SM00313)  RGS (SM00315)  
Conserved Domain (NCBI)SNX13
DMDM Disease mutations23161
Blocks (Seattle)SNX13
SuperfamilyQ9Y5W8
Human Protein AtlasENSG00000071189
Peptide AtlasQ9Y5W8
HPRD09418
IPIIPI00396267   IPI00478181   IPI00939853   IPI00300112   IPI00916687   IPI00917265   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5W8
IntAct (EBI)Q9Y5W8
FunCoupENSG00000071189
BioGRIDSNX13
STRING (EMBL)SNX13
ZODIACSNX13
Ontologies - Pathways
QuickGOQ9Y5W8
Ontology : AmiGOearly endosome  intracellular protein transport  negative regulation of signal transduction  early endosome membrane  phosphatidylinositol-3-phosphate binding  phosphatidylinositol binding  positive regulation of GTPase activity  
Ontology : EGO-EBIearly endosome  intracellular protein transport  negative regulation of signal transduction  early endosome membrane  phosphatidylinositol-3-phosphate binding  phosphatidylinositol binding  positive regulation of GTPase activity  
NDEx NetworkSNX13
Atlas of Cancer Signalling NetworkSNX13
Wikipedia pathwaysSNX13
Orthology - Evolution
OrthoDB23161
GeneTree (enSembl)ENSG00000071189
Phylogenetic Trees/Animal Genes : TreeFamSNX13
HOVERGENQ9Y5W8
HOGENOMQ9Y5W8
Homologs : HomoloGeneSNX13
Homology/Alignments : Family Browser (UCSC)SNX13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX13
dbVarSNX13
ClinVarSNX13
1000_GenomesSNX13 
Exome Variant ServerSNX13
ExAC (Exome Aggregation Consortium)SNX13 (select the gene name)
Genetic variants : HAPMAP23161
Genomic Variants (DGV)SNX13 [DGVbeta]
DECIPHERSNX13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX13 
Mutations
ICGC Data PortalSNX13 
TCGA Data PortalSNX13 
Broad Tumor PortalSNX13
OASIS PortalSNX13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX13
DgiDB (Drug Gene Interaction Database)SNX13
DoCM (Curated mutations)SNX13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX13 (select a term)
intoGenSNX13
Cancer3DSNX13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606589   
Orphanet
MedgenSNX13
Genetic Testing Registry SNX13
NextProtQ9Y5W8 [Medical]
TSGene23161
GENETestsSNX13
Target ValidationSNX13
Huge Navigator SNX13 [HugePedia]
snp3D : Map Gene to Disease23161
BioCentury BCIQSNX13
ClinGenSNX13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23161
Chemical/Pharm GKB GenePA129697240
Clinical trialSNX13
Miscellaneous
canSAR (ICR)SNX13 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX13
EVEXSNX13
GoPubMedSNX13
iHOPSNX13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:33 CEST 2017

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