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SNX15 (sorting nexin 15)

Identity

Other aliasHSAF001435
HGNC (Hugo) SNX15
LocusID (NCBI) 29907
Atlas_Id 74049
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65027408 and ends at 65040572 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SAC3D1 (11q13.1) / SNX15 (11q13.1)SNX15 (11q13.1) / C11orf85 (11q13.1)SNX15 (11q13.1) / NAALADL1 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX15   14978
Cards
Entrez_Gene (NCBI)SNX15  29907  sorting nexin 15
AliasesHSAF001435
GeneCards (Weizmann)SNX15
Ensembl hg19 (Hinxton)ENSG00000110025 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110025 [Gene_View]  chr11:65027408-65040572 [Contig_View]  SNX15 [Vega]
ICGC DataPortalENSG00000110025
TCGA cBioPortalSNX15
AceView (NCBI)SNX15
Genatlas (Paris)SNX15
WikiGenes29907
SOURCE (Princeton)SNX15
Genetics Home Reference (NIH)SNX15
Genomic and cartography
GoldenPath hg38 (UCSC)SNX15  -     chr11:65027408-65040572 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX15  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblSNX15 - 11q13.1 [CytoView hg19]  SNX15 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBISNX15 [Mapview hg19]  SNX15 [Mapview hg38]
OMIM605964   
Gene and transcription
Genbank (Entrez)AB209439 AF001435 AF175267 AF175268 AK315034
RefSeq transcript (Entrez)NM_013306 NM_147777
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX15
Cluster EST : UnigeneHs.80132 [ NCBI ]
CGAP (NCI)Hs.80132
Alternative Splicing GalleryENSG00000110025
Gene ExpressionSNX15 [ NCBI-GEO ]   SNX15 [ EBI - ARRAY_EXPRESS ]   SNX15 [ SEEK ]   SNX15 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29907
GTEX Portal (Tissue expression)SNX15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRS6
Splice isoforms : SwissVarQ9NRS6
PhosPhoSitePlusQ9NRS6
Domaine pattern : Prosite (Expaxy)PX (PS50195)   
Domains : Interpro (EBI)MIT    Phox   
Domain families : Pfam (Sanger)MIT (PF04212)    PX (PF00787)   
Domain families : Pfam (NCBI)pfam04212    pfam00787   
Domain families : Smart (EMBL)MIT (SM00745)  PX (SM00312)  
Conserved Domain (NCBI)SNX15
DMDM Disease mutations29907
Blocks (Seattle)SNX15
SuperfamilyQ9NRS6
Human Protein AtlasENSG00000110025
Peptide AtlasQ9NRS6
HPRD12073
IPIIPI00016820   IPI00894275   IPI00293918   IPI00981885   IPI00976544   IPI00978686   IPI00982533   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRS6
IntAct (EBI)Q9NRS6
FunCoupENSG00000110025
BioGRIDSNX15
STRING (EMBL)SNX15
ZODIACSNX15
Ontologies - Pathways
QuickGOQ9NRS6
Ontology : AmiGOprotein binding  nucleolus  cytoplasm  cytosol  cytosol  intracellular protein transport  signal transduction  membrane  cytoplasmic vesicle membrane  phosphatidylinositol binding  
Ontology : EGO-EBIprotein binding  nucleolus  cytoplasm  cytosol  cytosol  intracellular protein transport  signal transduction  membrane  cytoplasmic vesicle membrane  phosphatidylinositol binding  
NDEx NetworkSNX15
Atlas of Cancer Signalling NetworkSNX15
Wikipedia pathwaysSNX15
Orthology - Evolution
OrthoDB29907
GeneTree (enSembl)ENSG00000110025
Phylogenetic Trees/Animal Genes : TreeFamSNX15
HOVERGENQ9NRS6
HOGENOMQ9NRS6
Homologs : HomoloGeneSNX15
Homology/Alignments : Family Browser (UCSC)SNX15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX15
dbVarSNX15
ClinVarSNX15
1000_GenomesSNX15 
Exome Variant ServerSNX15
ExAC (Exome Aggregation Consortium)SNX15 (select the gene name)
Genetic variants : HAPMAP29907
Genomic Variants (DGV)SNX15 [DGVbeta]
DECIPHERSNX15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX15 
Mutations
ICGC Data PortalSNX15 
TCGA Data PortalSNX15 
Broad Tumor PortalSNX15
OASIS PortalSNX15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX15
DgiDB (Drug Gene Interaction Database)SNX15
DoCM (Curated mutations)SNX15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX15 (select a term)
intoGenSNX15
Cancer3DSNX15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605964   
Orphanet
MedgenSNX15
Genetic Testing Registry SNX15
NextProtQ9NRS6 [Medical]
TSGene29907
GENETestsSNX15
Huge Navigator SNX15 [HugePedia]
snp3D : Map Gene to Disease29907
BioCentury BCIQSNX15
ClinGenSNX15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29907
Chemical/Pharm GKB GenePA37953
Clinical trialSNX15
Miscellaneous
canSAR (ICR)SNX15 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX15
EVEXSNX15
GoPubMedSNX15
iHOPSNX15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:56:01 CEST 2017

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