SNX16 (sorting nexin 16)

2014-11-01  

Identity

HGNC
SNX16
LOCATION
8q21.13
LOCUSID
64089
ALIAS
-
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 64089
MIM: 614903
HGNC: 14980
Ensembl: ENSG00000104497

Variants:

dbSNP: 64089
ClinVar: 64089
TCGA: ENSG00000104497
COSMIC: SNX16

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000104497ENST00000345957P57768
ENSG00000104497ENST00000353788P57768
ENSG00000104497ENST00000396330P57768
ENSG00000104497ENST00000518183E5RJ65
ENSG00000104497ENST00000519119E5RG30
ENSG00000104497ENST00000519817E5RHF1
ENSG00000104497ENST00000520618E5RGS8
ENSG00000104497ENST00000521773E5RJ81
ENSG00000104497ENST00000521810E5RGQ6
ENSG00000104497ENST00000523757E5RH07
ENSG00000104497ENST00000615066A0A0C4DGW2

Expression (GTEx)

0
5
10
15
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
128130482003Evidence for a role of SNX16 in regulating traffic between the early and later endosomal compartments.19
197549482009Evaluation of nine candidate genes in patients with normal tension glaucoma: a case control study.12
287128072017SNX16 Regulates the Recycling of E-Cadherin through a Unique Mechanism of Coordinated Membrane and Cargo Binding.4

Citation

Dessen P

SNX16 (sorting nexin 16)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/74050/snx16