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SNX16 (sorting nexin 16)

Identity

Other alias-
HGNC (Hugo) SNX16
LocusID (NCBI) 64089
Atlas_Id 74050
Location 8q21.13  [Link to chromosome band 8q21]
Location_base_pair Starts at 81799583 and ends at 81842286 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNX16 (8q21.13) / PCCA (13q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX16   14980
Cards
Entrez_Gene (NCBI)SNX16  64089  sorting nexin 16
Aliases
GeneCards (Weizmann)SNX16
Ensembl hg19 (Hinxton)ENSG00000104497 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104497 [Gene_View]  chr8:81799583-81842286 [Contig_View]  SNX16 [Vega]
ICGC DataPortalENSG00000104497
TCGA cBioPortalSNX16
AceView (NCBI)SNX16
Genatlas (Paris)SNX16
WikiGenes64089
SOURCE (Princeton)SNX16
Genetics Home Reference (NIH)SNX16
Genomic and cartography
GoldenPath hg38 (UCSC)SNX16  -     chr8:81799583-81842286 -  8q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX16  -     8q21.13   [Description]    (hg19-Feb_2009)
EnsemblSNX16 - 8q21.13 [CytoView hg19]  SNX16 - 8q21.13 [CytoView hg38]
Mapping of homologs : NCBISNX16 [Mapview hg19]  SNX16 [Mapview hg38]
OMIM614903   
Gene and transcription
Genbank (Entrez)AF305779 AK290903 AL833763 BC033630 BG700892
RefSeq transcript (Entrez)NM_001348189 NM_022133 NM_152836 NM_152837
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX16
Cluster EST : UnigeneHs.492121 [ NCBI ]
CGAP (NCI)Hs.492121
Alternative Splicing GalleryENSG00000104497
Gene ExpressionSNX16 [ NCBI-GEO ]   SNX16 [ EBI - ARRAY_EXPRESS ]   SNX16 [ SEEK ]   SNX16 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64089
GTEX Portal (Tissue expression)SNX16
Human Protein AtlasENSG00000104497-SNX16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57768   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57768  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57768
Splice isoforms : SwissVarP57768
PhosPhoSitePlusP57768
Domaine pattern : Prosite (Expaxy)PX (PS50195)   
Domains : Interpro (EBI)Phox   
Domain families : Pfam (Sanger)PX (PF00787)   
Domain families : Pfam (NCBI)pfam00787   
Domain families : Smart (EMBL)PX (SM00312)  
Conserved Domain (NCBI)SNX16
DMDM Disease mutations64089
Blocks (Seattle)SNX16
SuperfamilyP57768
Human Protein Atlas [tissue]ENSG00000104497-SNX16 [tissue]
Peptide AtlasP57768
HPRD15411
IPIIPI00171077   IPI00170730   IPI00974153   IPI00982627   IPI00980336   IPI00978968   IPI00980766   IPI00981339   IPI00979761   
Protein Interaction databases
DIP (DOE-UCLA)P57768
IntAct (EBI)P57768
FunCoupENSG00000104497
BioGRIDSNX16
STRING (EMBL)SNX16
ZODIACSNX16
Ontologies - Pathways
QuickGOP57768
Ontology : AmiGOlysosome  early endosome  late endosome  cytosol  protein targeting to lysosome  endosome to lysosome transport  extrinsic component of endosome membrane  early endosome membrane  late endosome membrane  phosphatidylinositol binding  identical protein binding  intracellular membrane-bounded organelle  early endosome to late endosome transport  
Ontology : EGO-EBIlysosome  early endosome  late endosome  cytosol  protein targeting to lysosome  endosome to lysosome transport  extrinsic component of endosome membrane  early endosome membrane  late endosome membrane  phosphatidylinositol binding  identical protein binding  intracellular membrane-bounded organelle  early endosome to late endosome transport  
NDEx NetworkSNX16
Atlas of Cancer Signalling NetworkSNX16
Wikipedia pathwaysSNX16
Orthology - Evolution
OrthoDB64089
GeneTree (enSembl)ENSG00000104497
Phylogenetic Trees/Animal Genes : TreeFamSNX16
HOVERGENP57768
HOGENOMP57768
Homologs : HomoloGeneSNX16
Homology/Alignments : Family Browser (UCSC)SNX16
Gene fusions - Rearrangements
Tumor Fusion PortalSNX16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX16
dbVarSNX16
ClinVarSNX16
1000_GenomesSNX16 
Exome Variant ServerSNX16
ExAC (Exome Aggregation Consortium)ENSG00000104497
GNOMAD BrowserENSG00000104497
Genetic variants : HAPMAP64089
Genomic Variants (DGV)SNX16 [DGVbeta]
DECIPHERSNX16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX16 
Mutations
ICGC Data PortalSNX16 
TCGA Data PortalSNX16 
Broad Tumor PortalSNX16
OASIS PortalSNX16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX16
DgiDB (Drug Gene Interaction Database)SNX16
DoCM (Curated mutations)SNX16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX16 (select a term)
intoGenSNX16
Cancer3DSNX16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614903   
Orphanet
DisGeNETSNX16
MedgenSNX16
Genetic Testing Registry SNX16
NextProtP57768 [Medical]
TSGene64089
GENETestsSNX16
Target ValidationSNX16
Huge Navigator SNX16 [HugePedia]
snp3D : Map Gene to Disease64089
BioCentury BCIQSNX16
ClinGenSNX16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64089
Chemical/Pharm GKB GenePA134972049
Clinical trialSNX16
Miscellaneous
canSAR (ICR)SNX16 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX16
EVEXSNX16
GoPubMedSNX16
iHOPSNX16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:19:02 CET 2017

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