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SNX17 (sorting nexin 17)

Identity

Alias_symbol (synonym)KIAA0064
Other alias-
HGNC (Hugo) SNX17
LocusID (NCBI) 9784
Atlas_Id 74051
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27370496 and ends at 27377533 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BRE (2p23.2) / SNX17 (2p23.3)PRKCE (2p21) / SNX17 (2p23.3)SNX17 (2p23.3) / NFKBIZ (3q12.3)
SNX17 (2p23.3) / TXNL4B (16q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Hs.278569 [ NCBI ]
Nomenclature
HGNC (Hugo)SNX17   14979
Cards
Entrez_Gene (NCBI)SNX17  9784  sorting nexin 17
Aliases
GeneCards (Weizmann)SNX17
Ensembl hg19 (Hinxton)ENSG00000115234 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115234 [Gene_View]  chr2:27370496-27377533 [Contig_View]  SNX17 [Vega]
ICGC DataPortalENSG00000115234
TCGA cBioPortalSNX17
AceView (NCBI)SNX17
Genatlas (Paris)SNX17
WikiGenes9784
SOURCE (Princeton)SNX17
Genetics Home Reference (NIH)SNX17
Genomic and cartography
GoldenPath hg38 (UCSC)SNX17  -     chr2:27370496-27377533 +  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX17  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblSNX17 - 2p23.3 [CytoView hg19]  SNX17 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBISNX17 [Mapview hg19]  SNX17 [Mapview hg38]
OMIM605963   
Gene and transcription
Genbank (Entrez)AK129689 AK222543 AK293252 AK293464 AK295278
RefSeq transcript (Entrez)NM_001267059 NM_001267060 NM_001267061 NM_014748
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX17
Cluster EST : Unigene
CGAP (NCI)Hs.278569
Alternative Splicing GalleryENSG00000115234
Gene ExpressionSNX17 [ NCBI-GEO ]   SNX17 [ EBI - ARRAY_EXPRESS ]   SNX17 [ SEEK ]   SNX17 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9784
GTEX Portal (Tissue expression)SNX17
Human Protein AtlasENSG00000115234-SNX17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15036   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15036  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15036
Splice isoforms : SwissVarQ15036
PhosPhoSitePlusQ15036
Domaine pattern : Prosite (Expaxy)PX (PS50195)    RA (PS50200)   
Domains : Interpro (EBI)Phox    RA_dom    SNX17   
Domain families : Pfam (Sanger)PX (PF00787)   
Domain families : Pfam (NCBI)pfam00787   
Domain families : Smart (EMBL)PX (SM00312)  
Conserved Domain (NCBI)SNX17
DMDM Disease mutations9784
Blocks (Seattle)SNX17
PDB (SRS)3FOG    3LUI    4GXB    4TKN   
PDB (PDBSum)3FOG    3LUI    4GXB    4TKN   
PDB (IMB)3FOG    3LUI    4GXB    4TKN   
PDB (RSDB)3FOG    3LUI    4GXB    4TKN   
Structural Biology KnowledgeBase3FOG    3LUI    4GXB    4TKN   
SCOP (Structural Classification of Proteins)3FOG    3LUI    4GXB    4TKN   
CATH (Classification of proteins structures)3FOG    3LUI    4GXB    4TKN   
SuperfamilyQ15036
Human Protein Atlas [tissue]ENSG00000115234-SNX17 [tissue]
Peptide AtlasQ15036
HPRD05812
IPIIPI00014219   IPI01011580   IPI01010742   IPI00893665   IPI00894084   IPI00894454   
Protein Interaction databases
DIP (DOE-UCLA)Q15036
IntAct (EBI)Q15036
FunCoupENSG00000115234
BioGRIDSNX17
STRING (EMBL)SNX17
ZODIACSNX17
Ontologies - Pathways
QuickGOQ15036
Ontology : AmiGOcardiac septum development  receptor binding  protein binding  endosome  early endosome  Golgi apparatus  cytosol  cholesterol catabolic process  intracellular protein transport  intracellular protein transport  receptor-mediated endocytosis  signal transduction  protein C-terminus binding  endosome membrane  membrane  endosomal transport  regulation of endocytosis  cytoplasmic vesicle membrane  cytoplasmic vesicle  phosphatidylinositol binding  aorta development  intracellular membrane-bounded organelle  protein complex  low-density lipoprotein particle receptor binding  coronary vasculature development  retrograde transport, endosome to plasma membrane  
Ontology : EGO-EBIcardiac septum development  receptor binding  protein binding  endosome  early endosome  Golgi apparatus  cytosol  cholesterol catabolic process  intracellular protein transport  intracellular protein transport  receptor-mediated endocytosis  signal transduction  protein C-terminus binding  endosome membrane  membrane  endosomal transport  regulation of endocytosis  cytoplasmic vesicle membrane  cytoplasmic vesicle  phosphatidylinositol binding  aorta development  intracellular membrane-bounded organelle  protein complex  low-density lipoprotein particle receptor binding  coronary vasculature development  retrograde transport, endosome to plasma membrane  
NDEx NetworkSNX17
Atlas of Cancer Signalling NetworkSNX17
Wikipedia pathwaysSNX17
Orthology - Evolution
OrthoDB9784
GeneTree (enSembl)ENSG00000115234
Phylogenetic Trees/Animal Genes : TreeFamSNX17
HOVERGENQ15036
HOGENOMQ15036
Homologs : HomoloGeneSNX17
Homology/Alignments : Family Browser (UCSC)SNX17
Gene fusions - Rearrangements
Fusion: Tumor Portal SNX17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX17
dbVarSNX17
ClinVarSNX17
1000_GenomesSNX17 
Exome Variant ServerSNX17
ExAC (Exome Aggregation Consortium)ENSG00000115234
GNOMAD BrowserENSG00000115234
Genetic variants : HAPMAP9784
Genomic Variants (DGV)SNX17 [DGVbeta]
DECIPHERSNX17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX17 
Mutations
ICGC Data PortalSNX17 
TCGA Data PortalSNX17 
Broad Tumor PortalSNX17
OASIS PortalSNX17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX17
DgiDB (Drug Gene Interaction Database)SNX17
DoCM (Curated mutations)SNX17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX17 (select a term)
intoGenSNX17
Cancer3DSNX17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605963   
Orphanet
MedgenSNX17
Genetic Testing Registry SNX17
NextProtQ15036 [Medical]
TSGene9784
GENETestsSNX17
Target ValidationSNX17
Huge Navigator SNX17 [HugePedia]
snp3D : Map Gene to Disease9784
BioCentury BCIQSNX17
ClinGenSNX17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9784
Chemical/Pharm GKB GenePA37954
Clinical trialSNX17
Miscellaneous
canSAR (ICR)SNX17 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX17
EVEXSNX17
GoPubMedSNX17
iHOPSNX17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:30:22 CET 2017

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