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SNX19 (sorting nexin 19)

Identity

Alias_symbol (synonym)KIAA0254
CHET8
Other alias
HGNC (Hugo) SNX19
LocusID (NCBI) 399979
Atlas_Id 74053
Location 11q24.3  [Link to chromosome band 11q24]
Location_base_pair Starts at 130745766 and ends at 130786382 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AGBL1 (15q25.3) / SNX19 (11q24.3)APOA2 (1q23.3) / SNX19 (11q24.3)SNX19 (11q24.3) / ACTA1 (1q42.13)
SNX19 (11q24.3) / CHRDL1 (Xq23)SNX19 (11q24.3) / RPS23 (5q14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX19   21532
Cards
Entrez_Gene (NCBI)SNX19  399979  sorting nexin 19
AliasesCHET8
GeneCards (Weizmann)SNX19
Ensembl hg19 (Hinxton)ENSG00000120451 [Gene_View]  chr11:130745766-130786382 [Contig_View]  SNX19 [Vega]
Ensembl hg38 (Hinxton)ENSG00000120451 [Gene_View]  chr11:130745766-130786382 [Contig_View]  SNX19 [Vega]
ICGC DataPortalENSG00000120451
TCGA cBioPortalSNX19
AceView (NCBI)SNX19
Genatlas (Paris)SNX19
WikiGenes399979
SOURCE (Princeton)SNX19
Genetics Home Reference (NIH)SNX19
Genomic and cartography
GoldenPath hg19 (UCSC)SNX19  -     chr11:130745766-130786382 -  11q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNX19  -     11q24.3   [Description]    (hg38-Dec_2013)
EnsemblSNX19 - 11q24.3 [CytoView hg19]  SNX19 - 11q24.3 [CytoView hg38]
Mapping of homologs : NCBISNX19 [Mapview hg19]  SNX19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF395843 AK292457 AK294731 AK295606 AK304809
RefSeq transcript (Entrez)NM_001301089 NM_014758
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)SNX19
Cluster EST : UnigeneHs.444024 [ NCBI ]
CGAP (NCI)Hs.444024
Alternative Splicing GalleryENSG00000120451
Gene ExpressionSNX19 [ NCBI-GEO ]   SNX19 [ EBI - ARRAY_EXPRESS ]   SNX19 [ SEEK ]   SNX19 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399979
GTEX Portal (Tissue expression)SNX19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92543   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92543  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92543
Splice isoforms : SwissVarQ92543
PhosPhoSitePlusQ92543
Domaine pattern : Prosite (Expaxy)PX (PS50195)    PXA (PS51207)   
Domains : Interpro (EBI)Phox    Phox_assoc    PXA_dom    Sorting_nexin_C   
Domain families : Pfam (Sanger)Nexin_C (PF08628)    PX (PF00787)    PXA (PF02194)   
Domain families : Pfam (NCBI)pfam08628    pfam00787    pfam02194   
Domain families : Smart (EMBL)PX (SM00312)  PXA (SM00313)  
Conserved Domain (NCBI)SNX19
DMDM Disease mutations399979
Blocks (Seattle)SNX19
SuperfamilyQ92543
Human Protein AtlasENSG00000120451
Peptide AtlasQ92543
HPRD18621
IPIIPI00021984   IPI00981716   IPI00983386   IPI00910909   IPI00979331   
Protein Interaction databases
DIP (DOE-UCLA)Q92543
IntAct (EBI)Q92543
FunCoupENSG00000120451
BioGRIDSNX19
STRING (EMBL)SNX19
ZODIACSNX19
Ontologies - Pathways
QuickGOQ92543
Ontology : AmiGOchondrocyte differentiation  protein binding  cytoplasm  insulin secretion  cytoplasmic vesicle membrane  phosphatidylinositol binding  dense core granule maturation  
Ontology : EGO-EBIchondrocyte differentiation  protein binding  cytoplasm  insulin secretion  cytoplasmic vesicle membrane  phosphatidylinositol binding  dense core granule maturation  
NDEx NetworkSNX19
Atlas of Cancer Signalling NetworkSNX19
Wikipedia pathwaysSNX19
Orthology - Evolution
OrthoDB399979
GeneTree (enSembl)ENSG00000120451
Phylogenetic Trees/Animal Genes : TreeFamSNX19
HOVERGENQ92543
HOGENOMQ92543
Homologs : HomoloGeneSNX19
Homology/Alignments : Family Browser (UCSC)SNX19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX19
dbVarSNX19
ClinVarSNX19
1000_GenomesSNX19 
Exome Variant ServerSNX19
ExAC (Exome Aggregation Consortium)SNX19 (select the gene name)
Genetic variants : HAPMAP399979
Genomic Variants (DGV)SNX19 [DGVbeta]
DECIPHER (Syndromes)11:130745766-130786382  ENSG00000120451
CONAN: Copy Number AnalysisSNX19 
Mutations
ICGC Data PortalSNX19 
TCGA Data PortalSNX19 
Broad Tumor PortalSNX19
OASIS PortalSNX19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX19
DgiDB (Drug Gene Interaction Database)SNX19
DoCM (Curated mutations)SNX19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX19 (select a term)
intoGenSNX19
Cancer3DSNX19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNX19
Genetic Testing Registry SNX19
NextProtQ92543 [Medical]
TSGene399979
GENETestsSNX19
Huge Navigator SNX19 [HugePedia]
snp3D : Map Gene to Disease399979
BioCentury BCIQSNX19
ClinGenSNX19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399979
Chemical/Pharm GKB GenePA134904352
Clinical trialSNX19
Miscellaneous
canSAR (ICR)SNX19 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX19
EVEXSNX19
GoPubMedSNX19
iHOPSNX19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:05 CET 2017

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