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SNX20 (sorting nexin 20)

Identity

Alias_symbol (synonym)SLIC-1
SLIC1
Other alias
HGNC (Hugo) SNX20
LocusID (NCBI) 124460
Atlas_Id 74054
Location 16q12.1  [Link to chromosome band 16q12]
Location_base_pair Starts at 50666300 and ends at 50681353 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
WHSC1L1 (8p11.23) / SNX20 (16q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX20   30390
Cards
Entrez_Gene (NCBI)SNX20  124460  sorting nexin 20
AliasesSLIC1
GeneCards (Weizmann)SNX20
Ensembl hg19 (Hinxton)ENSG00000167208 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167208 [Gene_View]  chr16:50666300-50681353 [Contig_View]  SNX20 [Vega]
ICGC DataPortalENSG00000167208
TCGA cBioPortalSNX20
AceView (NCBI)SNX20
Genatlas (Paris)SNX20
WikiGenes124460
SOURCE (Princeton)SNX20
Genetics Home Reference (NIH)SNX20
Genomic and cartography
GoldenPath hg38 (UCSC)SNX20  -     chr16:50666300-50681353 -  16q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX20  -     16q12.1   [Description]    (hg19-Feb_2009)
EnsemblSNX20 - 16q12.1 [CytoView hg19]  SNX20 - 16q12.1 [CytoView hg38]
Mapping of homologs : NCBISNX20 [Mapview hg19]  SNX20 [Mapview hg38]
OMIM613281   
Gene and transcription
Genbank (Entrez)AA278249 AK055837 AK292650 AK292705 AY302441
RefSeq transcript (Entrez)NM_001144972 NM_153337 NM_182854
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX20
Cluster EST : UnigeneHs.715778 [ NCBI ]
CGAP (NCI)Hs.715778
Alternative Splicing GalleryENSG00000167208
Gene ExpressionSNX20 [ NCBI-GEO ]   SNX20 [ EBI - ARRAY_EXPRESS ]   SNX20 [ SEEK ]   SNX20 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124460
GTEX Portal (Tissue expression)SNX20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z614   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z614  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z614
Splice isoforms : SwissVarQ7Z614
PhosPhoSitePlusQ7Z614
Domaine pattern : Prosite (Expaxy)PX (PS50195)   
Domains : Interpro (EBI)Phox    TPR-like_helical_dom   
Domain families : Pfam (Sanger)PX (PF00787)   
Domain families : Pfam (NCBI)pfam00787   
Domain families : Smart (EMBL)PX (SM00312)  
Conserved Domain (NCBI)SNX20
DMDM Disease mutations124460
Blocks (Seattle)SNX20
SuperfamilyQ7Z614
Human Protein AtlasENSG00000167208
Peptide AtlasQ7Z614
HPRD15401
IPIIPI00376217   IPI00887166   IPI00216883   IPI00887818   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z614
IntAct (EBI)Q7Z614
FunCoupENSG00000167208
BioGRIDSNX20
STRING (EMBL)SNX20
ZODIACSNX20
Ontologies - Pathways
QuickGOQ7Z614
Ontology : AmiGOprotein binding  phosphatidylinositol-4,5-bisphosphate binding  nucleoplasm  plasma membrane  protein transport  early endosome membrane  phosphatidylinositol-3-phosphate binding  
Ontology : EGO-EBIprotein binding  phosphatidylinositol-4,5-bisphosphate binding  nucleoplasm  plasma membrane  protein transport  early endosome membrane  phosphatidylinositol-3-phosphate binding  
NDEx NetworkSNX20
Atlas of Cancer Signalling NetworkSNX20
Wikipedia pathwaysSNX20
Orthology - Evolution
OrthoDB124460
GeneTree (enSembl)ENSG00000167208
Phylogenetic Trees/Animal Genes : TreeFamSNX20
HOVERGENQ7Z614
HOGENOMQ7Z614
Homologs : HomoloGeneSNX20
Homology/Alignments : Family Browser (UCSC)SNX20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX20
dbVarSNX20
ClinVarSNX20
1000_GenomesSNX20 
Exome Variant ServerSNX20
ExAC (Exome Aggregation Consortium)SNX20 (select the gene name)
Genetic variants : HAPMAP124460
Genomic Variants (DGV)SNX20 [DGVbeta]
DECIPHERSNX20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX20 
Mutations
ICGC Data PortalSNX20 
TCGA Data PortalSNX20 
Broad Tumor PortalSNX20
OASIS PortalSNX20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX20
DgiDB (Drug Gene Interaction Database)SNX20
DoCM (Curated mutations)SNX20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX20 (select a term)
intoGenSNX20
Cancer3DSNX20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613281   
Orphanet
MedgenSNX20
Genetic Testing Registry SNX20
NextProtQ7Z614 [Medical]
TSGene124460
GENETestsSNX20
Target ValidationSNX20
Huge Navigator SNX20 [HugePedia]
snp3D : Map Gene to Disease124460
BioCentury BCIQSNX20
ClinGenSNX20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124460
Chemical/Pharm GKB GenePA162404311
Clinical trialSNX20
Miscellaneous
canSAR (ICR)SNX20 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX20
EVEXSNX20
GoPubMedSNX20
iHOPSNX20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:04 CEST 2017

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