Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNX21 (sorting nexin family member 21)

Identity

Alias_namesC20orf161
chromosome 20 open reading frame 161
Alias_symbol (synonym)dJ337O18.4
SNX-L
Other aliasPP3993
HGNC (Hugo) SNX21
LocusID (NCBI) 90203
Atlas_Id 74055
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45833831 and ends at 45843275 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNX21 (20q13.12) / CNTN4 (3p26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX21   16154
Cards
Entrez_Gene (NCBI)SNX21  90203  sorting nexin family member 21
AliasesC20orf161; PP3993; SNX-L; dJ337O18.4
GeneCards (Weizmann)SNX21
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:45833831-45843275 [Contig_View]  SNX21 [Vega]
TCGA cBioPortalSNX21
AceView (NCBI)SNX21
Genatlas (Paris)SNX21
WikiGenes90203
SOURCE (Princeton)SNX21
Genetics Home Reference (NIH)SNX21
Genomic and cartography
GoldenPath hg38 (UCSC)SNX21  -     chr20:45833831-45843275 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX21  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblSNX21 - 20q13.12 [CytoView hg19]  SNX21 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBISNX21 [Mapview hg19]  SNX21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF258570 AF395845 AF523834 AK091359 AK095851
RefSeq transcript (Entrez)NM_001042632 NM_001042633 NM_033421 NM_152897
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX21
Cluster EST : UnigeneHs.472854 [ NCBI ]
CGAP (NCI)Hs.472854
Gene ExpressionSNX21 [ NCBI-GEO ]   SNX21 [ EBI - ARRAY_EXPRESS ]   SNX21 [ SEEK ]   SNX21 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90203
GTEX Portal (Tissue expression)SNX21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969T3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969T3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969T3
Splice isoforms : SwissVarQ969T3
PhosPhoSitePlusQ969T3
Domaine pattern : Prosite (Expaxy)PX (PS50195)   
Domains : Interpro (EBI)Phox    TPR-like_helical_dom   
Domain families : Pfam (Sanger)PX (PF00787)   
Domain families : Pfam (NCBI)pfam00787   
Domain families : Smart (EMBL)PX (SM00312)  
Conserved Domain (NCBI)SNX21
DMDM Disease mutations90203
Blocks (Seattle)SNX21
SuperfamilyQ969T3
Peptide AtlasQ969T3
HPRD16641
IPIIPI00056503   IPI00807651   IPI01013412   IPI00783564   IPI00414957   IPI00552060   IPI00641834   IPI00335868   
Protein Interaction databases
DIP (DOE-UCLA)Q969T3
IntAct (EBI)Q969T3
BioGRIDSNX21
STRING (EMBL)SNX21
ZODIACSNX21
Ontologies - Pathways
QuickGOQ969T3
Ontology : AmiGOphosphatidylinositol-4,5-bisphosphate binding  protein transport  cytoplasmic vesicle membrane  early endosome membrane  phosphatidylinositol-3-phosphate binding  
Ontology : EGO-EBIphosphatidylinositol-4,5-bisphosphate binding  protein transport  cytoplasmic vesicle membrane  early endosome membrane  phosphatidylinositol-3-phosphate binding  
NDEx NetworkSNX21
Atlas of Cancer Signalling NetworkSNX21
Wikipedia pathwaysSNX21
Orthology - Evolution
OrthoDB90203
Phylogenetic Trees/Animal Genes : TreeFamSNX21
HOVERGENQ969T3
HOGENOMQ969T3
Homologs : HomoloGeneSNX21
Homology/Alignments : Family Browser (UCSC)SNX21
Gene fusions - Rearrangements
Tumor Fusion PortalSNX21
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX21
dbVarSNX21
ClinVarSNX21
1000_GenomesSNX21 
Exome Variant ServerSNX21
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP90203
Genomic Variants (DGV)SNX21 [DGVbeta]
DECIPHERSNX21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX21 
Mutations
ICGC Data PortalSNX21 
TCGA Data PortalSNX21 
Broad Tumor PortalSNX21
OASIS PortalSNX21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX21
DgiDB (Drug Gene Interaction Database)SNX21
DoCM (Curated mutations)SNX21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX21 (select a term)
intoGenSNX21
Cancer3DSNX21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSNX21
MedgenSNX21
Genetic Testing Registry SNX21
NextProtQ969T3 [Medical]
TSGene90203
GENETestsSNX21
Target ValidationSNX21
Huge Navigator SNX21 [HugePedia]
snp3D : Map Gene to Disease90203
BioCentury BCIQSNX21
ClinGenSNX21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90203
Chemical/Pharm GKB GenePA25703
Clinical trialSNX21
Miscellaneous
canSAR (ICR)SNX21 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX21
EVEXSNX21
GoPubMedSNX21
iHOPSNX21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:42:19 CET 2017

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