Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNX22 (sorting nexin 22)

Identity

Alias_symbol (synonym)FLJ13952
Other alias-
HGNC (Hugo) SNX22
LocusID (NCBI) 79856
Atlas_Id 74056
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 64151717 and ends at 64157481 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNX22 (15q22.31) / FXN (9q21.11)SNX22 (15q22.31) / INPP5B (1p34.3)SNX22 (15q22.31) / PPIB (15q22.31)
SNX22 (15q22.31) / SNX22 (15q22.31)TTYH3 (7p22.3) / SNX22 (15q22.31)TUG1 (22q12.2) / SNX22 (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX22   16315
Cards
Entrez_Gene (NCBI)SNX22  79856  sorting nexin 22
Aliases
GeneCards (Weizmann)SNX22
Ensembl hg19 (Hinxton)ENSG00000157734 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157734 [Gene_View]  chr15:64151717-64157481 [Contig_View]  SNX22 [Vega]
ICGC DataPortalENSG00000157734
TCGA cBioPortalSNX22
AceView (NCBI)SNX22
Genatlas (Paris)SNX22
WikiGenes79856
SOURCE (Princeton)SNX22
Genetics Home Reference (NIH)SNX22
Genomic and cartography
GoldenPath hg38 (UCSC)SNX22  -     chr15:64151717-64157481 +  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX22  -     15q22.31   [Description]    (hg19-Feb_2009)
EnsemblSNX22 - 15q22.31 [CytoView hg19]  SNX22 - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBISNX22 [Mapview hg19]  SNX22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024014 AK126655 AL832838 AY044653 BC014660
RefSeq transcript (Entrez)NM_024798
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX22
Cluster EST : UnigeneHs.744250 [ NCBI ]
CGAP (NCI)Hs.744250
Alternative Splicing GalleryENSG00000157734
Gene ExpressionSNX22 [ NCBI-GEO ]   SNX22 [ EBI - ARRAY_EXPRESS ]   SNX22 [ SEEK ]   SNX22 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79856
GTEX Portal (Tissue expression)SNX22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96L94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96L94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96L94
Splice isoforms : SwissVarQ96L94
PhosPhoSitePlusQ96L94
Domaine pattern : Prosite (Expaxy)PX (PS50195)   
Domains : Interpro (EBI)Phox   
Domain families : Pfam (Sanger)PX (PF00787)   
Domain families : Pfam (NCBI)pfam00787   
Domain families : Smart (EMBL)PX (SM00312)  
Conserved Domain (NCBI)SNX22
DMDM Disease mutations79856
Blocks (Seattle)SNX22
PDB (SRS)2ETT   
PDB (PDBSum)2ETT   
PDB (IMB)2ETT   
PDB (RSDB)2ETT   
Structural Biology KnowledgeBase2ETT   
SCOP (Structural Classification of Proteins)2ETT   
CATH (Classification of proteins structures)2ETT   
SuperfamilyQ96L94
Human Protein AtlasENSG00000157734
Peptide AtlasQ96L94
HPRD15412
IPIIPI00307039   IPI00445063   IPI00384079   
Protein Interaction databases
DIP (DOE-UCLA)Q96L94
IntAct (EBI)Q96L94
FunCoupENSG00000157734
BioGRIDSNX22
STRING (EMBL)SNX22
ZODIACSNX22
Ontologies - Pathways
QuickGOQ96L94
Ontology : AmiGOprotein transport  cytoplasmic vesicle membrane  phosphatidylinositol binding  
Ontology : EGO-EBIprotein transport  cytoplasmic vesicle membrane  phosphatidylinositol binding  
NDEx NetworkSNX22
Atlas of Cancer Signalling NetworkSNX22
Wikipedia pathwaysSNX22
Orthology - Evolution
OrthoDB79856
GeneTree (enSembl)ENSG00000157734
Phylogenetic Trees/Animal Genes : TreeFamSNX22
HOVERGENQ96L94
HOGENOMQ96L94
Homologs : HomoloGeneSNX22
Homology/Alignments : Family Browser (UCSC)SNX22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX22
dbVarSNX22
ClinVarSNX22
1000_GenomesSNX22 
Exome Variant ServerSNX22
ExAC (Exome Aggregation Consortium)SNX22 (select the gene name)
Genetic variants : HAPMAP79856
Genomic Variants (DGV)SNX22 [DGVbeta]
DECIPHERSNX22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX22 
Mutations
ICGC Data PortalSNX22 
TCGA Data PortalSNX22 
Broad Tumor PortalSNX22
OASIS PortalSNX22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX22
DgiDB (Drug Gene Interaction Database)SNX22
DoCM (Curated mutations)SNX22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX22 (select a term)
intoGenSNX22
Cancer3DSNX22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNX22
Genetic Testing Registry SNX22
NextProtQ96L94 [Medical]
TSGene79856
GENETestsSNX22
Target ValidationSNX22
Huge Navigator SNX22 [HugePedia]
snp3D : Map Gene to Disease79856
BioCentury BCIQSNX22
ClinGenSNX22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79856
Chemical/Pharm GKB GenePA134897329
Clinical trialSNX22
Miscellaneous
canSAR (ICR)SNX22 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX22
EVEXSNX22
GoPubMedSNX22
iHOPSNX22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:35 CEST 2017

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