Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SNX24 (sorting nexin 24)

Identity

Alias_symbol (synonym)SBBI31
Other aliasPRO1284
HGNC (Hugo) SNX24
LocusID (NCBI) 28966
Atlas_Id 74057
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 122845449 and ends at 123009212 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNX24 (5q23.2) / SNCAIP (5q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(5;5)(q23;q23) SNX24/SNCAIP

External links

Nomenclature
HGNC (Hugo)SNX24   21533
Cards
Entrez_Gene (NCBI)SNX24  28966  sorting nexin 24
AliasesPRO1284; SBBI31
GeneCards (Weizmann)SNX24
Ensembl hg19 (Hinxton)ENSG00000064652 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000064652 [Gene_View]  chr5:122845449-123009212 [Contig_View]  SNX24 [Vega]
ICGC DataPortalENSG00000064652
TCGA cBioPortalSNX24
AceView (NCBI)SNX24
Genatlas (Paris)SNX24
WikiGenes28966
SOURCE (Princeton)SNX24
Genetics Home Reference (NIH)SNX24
Genomic and cartography
GoldenPath hg38 (UCSC)SNX24  -     chr5:122845449-123009212 +  5q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX24  -     5q23.2   [Description]    (hg19-Feb_2009)
EnsemblSNX24 - 5q23.2 [CytoView hg19]  SNX24 - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBISNX24 [Mapview hg19]  SNX24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF139461 AK021473 AY044655 AY358098 BC010886
RefSeq transcript (Entrez)NM_014035
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX24
Cluster EST : UnigeneHs.483200 [ NCBI ]
CGAP (NCI)Hs.483200
Alternative Splicing GalleryENSG00000064652
Gene ExpressionSNX24 [ NCBI-GEO ]   SNX24 [ EBI - ARRAY_EXPRESS ]   SNX24 [ SEEK ]   SNX24 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28966
GTEX Portal (Tissue expression)SNX24
Human Protein AtlasENSG00000064652-SNX24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y343   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y343  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y343
Splice isoforms : SwissVarQ9Y343
PhosPhoSitePlusQ9Y343
Domaine pattern : Prosite (Expaxy)PX (PS50195)   
Domains : Interpro (EBI)Phox   
Domain families : Pfam (Sanger)PX (PF00787)   
Domain families : Pfam (NCBI)pfam00787   
Domain families : Smart (EMBL)PX (SM00312)  
Conserved Domain (NCBI)SNX24
DMDM Disease mutations28966
Blocks (Seattle)SNX24
PDB (SRS)4AZ9   
PDB (PDBSum)4AZ9   
PDB (IMB)4AZ9   
PDB (RSDB)4AZ9   
Structural Biology KnowledgeBase4AZ9   
SCOP (Structural Classification of Proteins)4AZ9   
CATH (Classification of proteins structures)4AZ9   
SuperfamilyQ9Y343
Human Protein Atlas [tissue]ENSG00000064652-SNX24 [tissue]
Peptide AtlasQ9Y343
HPRD15413
IPIIPI00022302   IPI00432714   IPI00798193   IPI00965877   IPI00964711   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y343
IntAct (EBI)Q9Y343
FunCoupENSG00000064652
BioGRIDSNX24
STRING (EMBL)SNX24
ZODIACSNX24
Ontologies - Pathways
QuickGOQ9Y343
Ontology : AmiGOphosphatidylinositol-5-phosphate binding  protein transport  cytoplasmic vesicle membrane  phosphatidylinositol-3-phosphate binding  phosphatidylinositol-4-phosphate binding  
Ontology : EGO-EBIphosphatidylinositol-5-phosphate binding  protein transport  cytoplasmic vesicle membrane  phosphatidylinositol-3-phosphate binding  phosphatidylinositol-4-phosphate binding  
NDEx NetworkSNX24
Atlas of Cancer Signalling NetworkSNX24
Wikipedia pathwaysSNX24
Orthology - Evolution
OrthoDB28966
GeneTree (enSembl)ENSG00000064652
Phylogenetic Trees/Animal Genes : TreeFamSNX24
HOVERGENQ9Y343
HOGENOMQ9Y343
Homologs : HomoloGeneSNX24
Homology/Alignments : Family Browser (UCSC)SNX24
Gene fusions - Rearrangements
Fusion : QuiverSNX24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX24
dbVarSNX24
ClinVarSNX24
1000_GenomesSNX24 
Exome Variant ServerSNX24
ExAC (Exome Aggregation Consortium)ENSG00000064652
GNOMAD BrowserENSG00000064652
Genetic variants : HAPMAP28966
Genomic Variants (DGV)SNX24 [DGVbeta]
DECIPHERSNX24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX24 
Mutations
ICGC Data PortalSNX24 
TCGA Data PortalSNX24 
Broad Tumor PortalSNX24
OASIS PortalSNX24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX24
DgiDB (Drug Gene Interaction Database)SNX24
DoCM (Curated mutations)SNX24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX24 (select a term)
intoGenSNX24
Cancer3DSNX24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSNX24
MedgenSNX24
Genetic Testing Registry SNX24
NextProtQ9Y343 [Medical]
TSGene28966
GENETestsSNX24
Target ValidationSNX24
Huge Navigator SNX24 [HugePedia]
snp3D : Map Gene to Disease28966
BioCentury BCIQSNX24
ClinGenSNX24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28966
Chemical/Pharm GKB GenePA134980773
Clinical trialSNX24
Miscellaneous
canSAR (ICR)SNX24 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX24
EVEXSNX24
GoPubMedSNX24
iHOPSNX24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:53:54 CET 2018
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