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SNX24 (sorting nexin 24)

Identity

Alias (NCBI)PRO1284
SBBI31
HGNC (Hugo) SNX24
HGNC Alias symbSBBI31
LocusID (NCBI) 28966
Atlas_Id 74057
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 122845613 and ends at 123009204 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNX24 (5q23.2) / SNCAIP (5q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)SNX24   21533
Cards
Entrez_Gene (NCBI)SNX24    sorting nexin 24
AliasesPRO1284; SBBI31
GeneCards (Weizmann)SNX24
Ensembl hg19 (Hinxton)ENSG00000064652 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000064652 [Gene_View]  ENSG00000064652 [Sequence]  chr5:122845613-123009204 [Contig_View]  SNX24 [Vega]
ICGC DataPortalENSG00000064652
TCGA cBioPortalSNX24
AceView (NCBI)SNX24
Genatlas (Paris)SNX24
SOURCE (Princeton)SNX24
Genetics Home Reference (NIH)SNX24
Genomic and cartography
GoldenPath hg38 (UCSC)SNX24  -     chr5:122845613-123009204 +  5q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX24  -     5q23.2   [Description]    (hg19-Feb_2009)
GoldenPathSNX24 - 5q23.2 [CytoView hg19]  SNX24 - 5q23.2 [CytoView hg38]
ImmunoBaseENSG00000064652
Genome Data Viewer NCBISNX24 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF139461 AK021473 AY044655 AY358098 BC010886
RefSeq transcript (Entrez)NM_014035
Consensus coding sequences : CCDS (NCBI)SNX24
Gene ExpressionSNX24 [ NCBI-GEO ]   SNX24 [ EBI - ARRAY_EXPRESS ]   SNX24 [ SEEK ]   SNX24 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX24 [ Firebrowse - Broad ]
GenevisibleExpression of SNX24 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28966
GTEX Portal (Tissue expression)SNX24
Human Protein AtlasENSG00000064652-SNX24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y343   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y343  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y343
PhosPhoSitePlusQ9Y343
Domaine pattern : Prosite (Expaxy)PX (PS50195)   
Domains : Interpro (EBI)PX_dom    PX_dom_sf   
Domain families : Pfam (Sanger)PX (PF00787)   
Domain families : Pfam (NCBI)pfam00787   
Domain families : Smart (EMBL)PX (SM00312)  
Conserved Domain (NCBI)SNX24
PDB (RSDB)4AZ9   
PDB Europe4AZ9   
PDB (PDBSum)4AZ9   
PDB (IMB)4AZ9   
Structural Biology KnowledgeBase4AZ9   
SCOP (Structural Classification of Proteins)4AZ9   
CATH (Classification of proteins structures)4AZ9   
SuperfamilyQ9Y343
AlphaFold pdb e-kbQ9Y343   
Human Protein Atlas [tissue]ENSG00000064652-SNX24 [tissue]
HPRD15413
Protein Interaction databases
DIP (DOE-UCLA)Q9Y343
IntAct (EBI)Q9Y343
BioGRIDSNX24
STRING (EMBL)SNX24
ZODIACSNX24
Ontologies - Pathways
QuickGOQ9Y343
Ontology : AmiGOprotein binding  phosphatidylinositol-5-phosphate binding  protein transport  cytoplasmic vesicle membrane  phosphatidylinositol-3-phosphate binding  phosphatidylinositol-4-phosphate binding  phosphatidylinositol phosphate binding  
Ontology : EGO-EBIprotein binding  phosphatidylinositol-5-phosphate binding  protein transport  cytoplasmic vesicle membrane  phosphatidylinositol-3-phosphate binding  phosphatidylinositol-4-phosphate binding  phosphatidylinositol phosphate binding  
NDEx NetworkSNX24
Atlas of Cancer Signalling NetworkSNX24
Wikipedia pathwaysSNX24
Orthology - Evolution
OrthoDB28966
GeneTree (enSembl)ENSG00000064652
Phylogenetic Trees/Animal Genes : TreeFamSNX24
Homologs : HomoloGeneSNX24
Homology/Alignments : Family Browser (UCSC)SNX24
Gene fusions - Rearrangements
Fusion : QuiverSNX24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX24
dbVarSNX24
ClinVarSNX24
MonarchSNX24
1000_GenomesSNX24 
Exome Variant ServerSNX24
GNOMAD BrowserENSG00000064652
Varsome BrowserSNX24
ACMGSNX24 variants
VarityQ9Y343
Genomic Variants (DGV)SNX24 [DGVbeta]
DECIPHERSNX24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX24 
Mutations
ICGC Data PortalSNX24 
TCGA Data PortalSNX24 
Broad Tumor PortalSNX24
OASIS PortalSNX24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX24  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSNX24
Mutations and Diseases : HGMDSNX24
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSNX24
DgiDB (Drug Gene Interaction Database)SNX24
DoCM (Curated mutations)SNX24
CIViC (Clinical Interpretations of Variants in Cancer)SNX24
Cancer3DSNX24
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSNX24
MedgenSNX24
Genetic Testing Registry SNX24
NextProtQ9Y343 [Medical]
GENETestsSNX24
Target ValidationSNX24
Huge Navigator SNX24 [HugePedia]
ClinGenSNX24
Clinical trials, drugs, therapy
MyCancerGenomeSNX24
Protein Interactions : CTDSNX24
Pharm GKB GenePA134980773
PharosQ9Y343
Clinical trialSNX24
Miscellaneous
canSAR (ICR)SNX24
HarmonizomeSNX24
DataMed IndexSNX24
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSNX24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:23:37 CEST 2021
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