Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNX25 (sorting nexin 25)

Identity

Alias_symbol (synonym)SBBI31
Other aliasMSTP043
HGNC (Hugo) SNX25
LocusID (NCBI) 83891
Atlas_Id 53770
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 185204237 and ends at 185363971 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX25   21883
Cards
Entrez_Gene (NCBI)SNX25  83891  sorting nexin 25
AliasesMSTP043; SBBI31
GeneCards (Weizmann)SNX25
Ensembl hg19 (Hinxton)ENSG00000109762 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109762 [Gene_View]  chr4:185204237-185363971 [Contig_View]  SNX25 [Vega]
ICGC DataPortalENSG00000109762
TCGA cBioPortalSNX25
AceView (NCBI)SNX25
Genatlas (Paris)SNX25
WikiGenes83891
SOURCE (Princeton)SNX25
Genetics Home Reference (NIH)SNX25
Genomic and cartography
GoldenPath hg38 (UCSC)SNX25  -     chr4:185204237-185363971 +  4q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX25  -     4q35.1   [Description]    (hg19-Feb_2009)
EnsemblSNX25 - 4q35.1 [CytoView hg19]  SNX25 - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBISNX25 [Mapview hg19]  SNX25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA626308 AF113223 AK026814 AK095661 AW968034
RefSeq transcript (Entrez)NM_001317781 NM_031953
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX25
Cluster EST : UnigeneHs.369091 [ NCBI ]
CGAP (NCI)Hs.369091
Alternative Splicing GalleryENSG00000109762
Gene ExpressionSNX25 [ NCBI-GEO ]   SNX25 [ EBI - ARRAY_EXPRESS ]   SNX25 [ SEEK ]   SNX25 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83891
GTEX Portal (Tissue expression)SNX25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3E2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3E2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3E2
Splice isoforms : SwissVarQ9H3E2
PhosPhoSitePlusQ9H3E2
Domaine pattern : Prosite (Expaxy)PX (PS50195)    PXA (PS51207)    RGS (PS50132)   
Domains : Interpro (EBI)Phox    Phox_assoc    RGS    Sorting_nexin_C   
Domain families : Pfam (Sanger)Nexin_C (PF08628)    PX (PF00787)    PXA (PF02194)    RGS (PF00615)   
Domain families : Pfam (NCBI)pfam08628    pfam00787    pfam02194    pfam00615   
Domain families : Smart (EMBL)PX (SM00312)  PXA (SM00313)  RGS (SM00315)  
Conserved Domain (NCBI)SNX25
DMDM Disease mutations83891
Blocks (Seattle)SNX25
SuperfamilyQ9H3E2
Human Protein AtlasENSG00000109762
Peptide AtlasQ9H3E2
HPRD15414
IPIIPI00024706   IPI00167024   IPI00914524   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3E2
IntAct (EBI)Q9H3E2
FunCoupENSG00000109762
BioGRIDSNX25
STRING (EMBL)SNX25
ZODIACSNX25
Ontologies - Pathways
QuickGOQ9H3E2
Ontology : AmiGOmolecular_function  cellular_component  endosome membrane  protein transport  negative regulation of transforming growth factor beta receptor signaling pathway  receptor catabolic process  type I transforming growth factor beta receptor binding  phosphatidylinositol binding  intracellular membrane-bounded organelle  negative regulation of pathway-restricted SMAD protein phosphorylation  
Ontology : EGO-EBImolecular_function  cellular_component  endosome membrane  protein transport  negative regulation of transforming growth factor beta receptor signaling pathway  receptor catabolic process  type I transforming growth factor beta receptor binding  phosphatidylinositol binding  intracellular membrane-bounded organelle  negative regulation of pathway-restricted SMAD protein phosphorylation  
NDEx NetworkSNX25
Atlas of Cancer Signalling NetworkSNX25
Wikipedia pathwaysSNX25
Orthology - Evolution
OrthoDB83891
GeneTree (enSembl)ENSG00000109762
Phylogenetic Trees/Animal Genes : TreeFamSNX25
HOVERGENQ9H3E2
HOGENOMQ9H3E2
Homologs : HomoloGeneSNX25
Homology/Alignments : Family Browser (UCSC)SNX25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX25
dbVarSNX25
ClinVarSNX25
1000_GenomesSNX25 
Exome Variant ServerSNX25
ExAC (Exome Aggregation Consortium)SNX25 (select the gene name)
Genetic variants : HAPMAP83891
Genomic Variants (DGV)SNX25 [DGVbeta]
DECIPHERSNX25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX25 
Mutations
ICGC Data PortalSNX25 
TCGA Data PortalSNX25 
Broad Tumor PortalSNX25
OASIS PortalSNX25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX25
DgiDB (Drug Gene Interaction Database)SNX25
DoCM (Curated mutations)SNX25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX25 (select a term)
intoGenSNX25
Cancer3DSNX25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNX25
Genetic Testing Registry SNX25
NextProtQ9H3E2 [Medical]
TSGene83891
GENETestsSNX25
Target ValidationSNX25
Huge Navigator SNX25 [HugePedia]
snp3D : Map Gene to Disease83891
BioCentury BCIQSNX25
ClinGenSNX25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83891
Chemical/Pharm GKB GenePA134988505
Clinical trialSNX25
Miscellaneous
canSAR (ICR)SNX25 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX25
EVEXSNX25
GoPubMedSNX25
iHOPSNX25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:15:18 CEST 2017

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