SNX29 (sorting nexin 29)

2014-11-01  

Identity

HGNC
SNX29
LOCATION
16p13.13
LOCUSID
92017
ALIAS
A-388D4.1,RUNDC2A
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 92017
HGNC: 30542
Ensembl: ENSG00000048471

Variants:

dbSNP: 92017
ClinVar: 92017
TCGA: ENSG00000048471
COSMIC: SNX29

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000048471ENST00000562510H3BPI1
ENSG00000048471ENST00000563308H3BQF0
ENSG00000048471ENST00000564791A0A0C4DGM3
ENSG00000048471ENST00000566228Q8TEQ0
ENSG00000048471ENST00000569801H3BT98

Expression (GTEx)

0
5
10
15
20
25
30
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
233581602014Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci.51
197732792009Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity.6

Citation

Dessen P

SNX29 (sorting nexin 29)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/55065/snx29