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SNX29 (sorting nexin 29)

Identity

Alias_namesRUNDC2A
RUN domain containing 2A
Alias_symbol (synonym)FLJ12363
Other aliasA-388D4.1
HGNC (Hugo) SNX29
LocusID (NCBI) 92017
Atlas_Id 55065
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 12070591 and ends at 12668146 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
A2ML1 (12p13.31) / SNX29 (16p13.13)CIITA (16p13.13) / SNX29 (16p13.13)EDC3 (15q24.1) / SNX29 (16p13.13)
MGRN1 (16p13.3) / SNX29 (16p13.13)MKL2 (16p13.12) / SNX29 (16p13.13)MYH11 (16p13.11) / SNX29 (16p13.13)
SNX29 (16p13.13) / CIITA (16p13.13)SNX29 (16p13.13) / CLEC16A (16p13.13)SNX29 (16p13.13) / DNAJC7 (17q21.2)
SNX29 (16p13.13) / MCM7 (7q22.1)SNX29 (16p13.13) / NCAN (19p13.11)SNX29 (16p13.13) / RERG (12p12.3)
SNX29 (16p13.13) / SNX29 (16p13.13)SNX29 (16p13.13) / SOX2-OT (3q26.33)SNX29 (16p13.13) / TNFRSF17 (16p13.13)
SOX2-OT (3q26.33) / SNX29 (16p13.13)TMEM241 (18q11.2) / SNX29 (16p13.13)C18orf45 SNX29 16p13.13
EDC3 15q24.1 / SNX29 16p13.13MGRN1 16p13.3 / SNX29 16p13.13SNX29 16p13.13 / CLEC16A 16p13.13
SNX29 16p13.13 / TNFRSF17 16p13.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX29   30542
Cards
Entrez_Gene (NCBI)SNX29  92017  sorting nexin 29
AliasesA-388D4.1; RUNDC2A
GeneCards (Weizmann)SNX29
Ensembl hg19 (Hinxton)ENSG00000048471 [Gene_View]  chr16:12070591-12668146 [Contig_View]  SNX29 [Vega]
Ensembl hg38 (Hinxton)ENSG00000048471 [Gene_View]  chr16:12070591-12668146 [Contig_View]  SNX29 [Vega]
ICGC DataPortalENSG00000048471
TCGA cBioPortalSNX29
AceView (NCBI)SNX29
Genatlas (Paris)SNX29
WikiGenes92017
SOURCE (Princeton)SNX29
Genetics Home Reference (NIH)SNX29
Genomic and cartography
GoldenPath hg19 (UCSC)SNX29  -     chr16:12070591-12668146 +  16p13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNX29  -     16p13.13   [Description]    (hg38-Dec_2013)
EnsemblSNX29 - 16p13.13 [CytoView hg19]  SNX29 - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBISNX29 [Mapview hg19]  SNX29 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI369689 AK022425 AK024473 AK074072 AK097928
RefSeq transcript (Entrez)NM_001009607 NM_001080530 NM_032167
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)SNX29
Cluster EST : UnigeneHs.458401 [ NCBI ]
CGAP (NCI)Hs.458401
Alternative Splicing GalleryENSG00000048471
Gene ExpressionSNX29 [ NCBI-GEO ]   SNX29 [ EBI - ARRAY_EXPRESS ]   SNX29 [ SEEK ]   SNX29 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92017
GTEX Portal (Tissue expression)SNX29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TEQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TEQ0
Splice isoforms : SwissVarQ8TEQ0
PhosPhoSitePlusQ8TEQ0
Domaine pattern : Prosite (Expaxy)PX (PS50195)    RUN (PS50826)   
Domains : Interpro (EBI)Phox    Run_dom   
Domain families : Pfam (Sanger)PX (PF00787)    RUN (PF02759)   
Domain families : Pfam (NCBI)pfam00787    pfam02759   
Domain families : Smart (EMBL)PX (SM00312)  RUN (SM00593)  
Conserved Domain (NCBI)SNX29
DMDM Disease mutations92017
Blocks (Seattle)SNX29
SuperfamilyQ8TEQ0
Human Protein AtlasENSG00000048471
Peptide AtlasQ8TEQ0
HPRD17437
IPIIPI00166504   IPI00030360   IPI00026771   IPI00784064   IPI00855845   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEQ0
IntAct (EBI)Q8TEQ0
FunCoupENSG00000048471
BioGRIDSNX29
STRING (EMBL)SNX29
ZODIACSNX29
Ontologies - Pathways
QuickGOQ8TEQ0
Ontology : AmiGOphosphatidylinositol binding  extracellular exosome  
Ontology : EGO-EBIphosphatidylinositol binding  extracellular exosome  
NDEx NetworkSNX29
Atlas of Cancer Signalling NetworkSNX29
Wikipedia pathwaysSNX29
Orthology - Evolution
OrthoDB92017
GeneTree (enSembl)ENSG00000048471
Phylogenetic Trees/Animal Genes : TreeFamSNX29
HOVERGENQ8TEQ0
HOGENOMQ8TEQ0
Homologs : HomoloGeneSNX29
Homology/Alignments : Family Browser (UCSC)SNX29
Gene fusions - Rearrangements
Fusion : MitelmanCIITA/SNX29 [16p13.13/16p13.13]  [t(16;16)(p13;p13)]  
Fusion : MitelmanEDC3/SNX29 [15q24.1/16p13.13]  [t(15;16)(q24;p13)]  
Fusion : MitelmanMGRN1/SNX29 [16p13.3/16p13.13]  [t(16;16)(p13;p13)]  
Fusion : MitelmanMKL2/SNX29 [16p13.12/16p13.13]  [t(16;16)(p13;p13)]  
Fusion : MitelmanSNX29/CLEC16A [16p13.13/16p13.13]  [t(16;16)(p13;p13)]  
Fusion : MitelmanSNX29/NCAN [16p13.13/19p13.11]  [t(16;19)(p13;p13)]  
Fusion : MitelmanSNX29/TNFRSF17 [16p13.13/16p13.13]  [t(16;16)(p13;p13)]  
Fusion : MitelmanTMEM241/SNX29 [18q11.2/16p13.13]  [t(16;18)(p13;q11)]  
Fusion: TCGAC18orf45 SNX29 16p13.13 LUAD
Fusion: TCGAEDC3 15q24.1 SNX29 16p13.13 BRCA
Fusion: TCGAMGRN1 16p13.3 SNX29 16p13.13 HNSC
Fusion: TCGASNX29 16p13.13 CLEC16A 16p13.13 LUAD
Fusion: TCGASNX29 16p13.13 TNFRSF17 16p13.13 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX29
dbVarSNX29
ClinVarSNX29
1000_GenomesSNX29 
Exome Variant ServerSNX29
ExAC (Exome Aggregation Consortium)SNX29 (select the gene name)
Genetic variants : HAPMAP92017
Genomic Variants (DGV)SNX29 [DGVbeta]
DECIPHER (Syndromes)16:12070591-12668146  ENSG00000048471
CONAN: Copy Number AnalysisSNX29 
Mutations
ICGC Data PortalSNX29 
TCGA Data PortalSNX29 
Broad Tumor PortalSNX29
OASIS PortalSNX29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX29
DgiDB (Drug Gene Interaction Database)SNX29
DoCM (Curated mutations)SNX29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX29 (select a term)
intoGenSNX29
Cancer3DSNX29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNX29
Genetic Testing Registry SNX29
NextProtQ8TEQ0 [Medical]
TSGene92017
GENETestsSNX29
Huge Navigator SNX29 [HugePedia]
snp3D : Map Gene to Disease92017
BioCentury BCIQSNX29
ClinGenSNX29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92017
Chemical/Pharm GKB GenePA162404312
Clinical trialSNX29
Miscellaneous
canSAR (ICR)SNX29 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX29
EVEXSNX29
GoPubMedSNX29
iHOPSNX29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:22 CEST 2017

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