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SNX29P1 (sorting nexin 29 pseudogene 1)

Identity

Alias_namesRUNDC2B
RUN domain containing 2B
Other aliasRUNDC2L
HGNC (Hugo) SNX29P1
LocusID (NCBI) 100652781
Atlas_Id 74058
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29370433 and ends at 29382545 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX29P1   31913
Cards
Entrez_Gene (NCBI)SNX29P1  100652781  sorting nexin 29 pseudogene 1
AliasesRUNDC2B; RUNDC2L
GeneCards (Weizmann)SNX29P1
Ensembl hg19 (Hinxton) [Gene_View]  chr16:29370433-29382545 [Contig_View]  SNX29P1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:29370433-29382545 [Contig_View]  SNX29P1 [Vega]
TCGA cBioPortalSNX29P1
AceView (NCBI)SNX29P1
Genatlas (Paris)SNX29P1
WikiGenes100652781
SOURCE (Princeton)SNX29P1
Genetics Home Reference (NIH)SNX29P1
Genomic and cartography
GoldenPath hg19 (UCSC)SNX29P1  -     chr16:29370433-29382545 +  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNX29P1  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblSNX29P1 - 16p11.2 [CytoView hg19]  SNX29P1 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBISNX29P1 [Mapview hg19]  SNX29P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC041583 DR003051 HQ447619
RefSeq transcript (Entrez)NM_001012391
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)SNX29P1
Cluster EST : UnigeneHs.658149 [ NCBI ]
CGAP (NCI)Hs.658149
Gene ExpressionSNX29P1 [ NCBI-GEO ]   SNX29P1 [ EBI - ARRAY_EXPRESS ]   SNX29P1 [ SEEK ]   SNX29P1 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX29P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100652781
GTEX Portal (Tissue expression)SNX29P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUI4
Splice isoforms : SwissVarQ8IUI4
PhosPhoSitePlusQ8IUI4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNX29P1
DMDM Disease mutations100652781
Blocks (Seattle)SNX29P1
SuperfamilyQ8IUI4
Peptide AtlasQ8IUI4
Protein Interaction databases
DIP (DOE-UCLA)Q8IUI4
IntAct (EBI)Q8IUI4
BioGRIDSNX29P1
STRING (EMBL)SNX29P1
ZODIACSNX29P1
Ontologies - Pathways
QuickGOQ8IUI4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSNX29P1
Atlas of Cancer Signalling NetworkSNX29P1
Wikipedia pathwaysSNX29P1
Orthology - Evolution
OrthoDB100652781
Phylogenetic Trees/Animal Genes : TreeFamSNX29P1
HOVERGENQ8IUI4
HOGENOMQ8IUI4
Homologs : HomoloGeneSNX29P1
Homology/Alignments : Family Browser (UCSC)SNX29P1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX29P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX29P1
dbVarSNX29P1
ClinVarSNX29P1
1000_GenomesSNX29P1 
Exome Variant ServerSNX29P1
ExAC (Exome Aggregation Consortium)SNX29P1 (select the gene name)
Genetic variants : HAPMAP100652781
Genomic Variants (DGV)SNX29P1 [DGVbeta]
DECIPHER (Syndromes)16:29370433-29382545  
CONAN: Copy Number AnalysisSNX29P1 
Mutations
ICGC Data PortalSNX29P1 
TCGA Data PortalSNX29P1 
Broad Tumor PortalSNX29P1
OASIS PortalSNX29P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSNX29P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX29P1
DgiDB (Drug Gene Interaction Database)SNX29P1
DoCM (Curated mutations)SNX29P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX29P1 (select a term)
intoGenSNX29P1
Cancer3DSNX29P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNX29P1
Genetic Testing Registry SNX29P1
NextProtQ8IUI4 [Medical]
TSGene100652781
GENETestsSNX29P1
Huge Navigator SNX29P1 [HugePedia]
snp3D : Map Gene to Disease100652781
BioCentury BCIQSNX29P1
ClinGenSNX29P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100652781
Clinical trialSNX29P1
Miscellaneous
canSAR (ICR)SNX29P1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX29P1
EVEXSNX29P1
GoPubMedSNX29P1
iHOPSNX29P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:07 CET 2017

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