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SNX29P2 (sorting nexin 29 pseudogene 2)

Identity

Alias_namesRUNDC2C
RUN domain containing 2C
Other alias
HGNC (Hugo) SNX29P2
LocusID (NCBI) 440352
Atlas_Id 74059
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29302287 and ends at 29365059 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNX29P2 (16p11.2) / PLA2G10 (16p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX29P2   31914
Cards
Entrez_Gene (NCBI)SNX29P2  440352  sorting nexin 29 pseudogene 2
AliasesRUNDC2C
GeneCards (Weizmann)SNX29P2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:29302287-29365059 [Contig_View]  SNX29P2 [Vega]
TCGA cBioPortalSNX29P2
AceView (NCBI)SNX29P2
Genatlas (Paris)SNX29P2
WikiGenes440352
SOURCE (Princeton)SNX29P2
Genetics Home Reference (NIH)SNX29P2
Genomic and cartography
GoldenPath hg38 (UCSC)SNX29P2  -     chr16:29302287-29365059 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX29P2  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblSNX29P2 - 16p11.2 [CytoView hg19]  SNX29P2 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBISNX29P2 [Mapview hg19]  SNX29P2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023827 BC024293 BX648280
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX29P2
Cluster EST : UnigeneHs.658149 [ NCBI ]
CGAP (NCI)Hs.658149
Gene ExpressionSNX29P2 [ NCBI-GEO ]   SNX29P2 [ EBI - ARRAY_EXPRESS ]   SNX29P2 [ SEEK ]   SNX29P2 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX29P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440352
GTEX Portal (Tissue expression)SNX29P2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUI4
Splice isoforms : SwissVarQ8IUI4
PhosPhoSitePlusQ8IUI4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNX29P2
DMDM Disease mutations440352
Blocks (Seattle)SNX29P2
SuperfamilyQ8IUI4
Peptide AtlasQ8IUI4
IPIIPI00878308   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUI4
IntAct (EBI)Q8IUI4
BioGRIDSNX29P2
STRING (EMBL)SNX29P2
ZODIACSNX29P2
Ontologies - Pathways
QuickGOQ8IUI4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSNX29P2
Atlas of Cancer Signalling NetworkSNX29P2
Wikipedia pathwaysSNX29P2
Orthology - Evolution
OrthoDB440352
Phylogenetic Trees/Animal Genes : TreeFamSNX29P2
HOVERGENQ8IUI4
HOGENOMQ8IUI4
Homologs : HomoloGeneSNX29P2
Homology/Alignments : Family Browser (UCSC)SNX29P2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX29P2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX29P2
dbVarSNX29P2
ClinVarSNX29P2
1000_GenomesSNX29P2 
Exome Variant ServerSNX29P2
ExAC (Exome Aggregation Consortium)SNX29P2 (select the gene name)
Genetic variants : HAPMAP440352
Genomic Variants (DGV)SNX29P2 [DGVbeta]
DECIPHERSNX29P2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX29P2 
Mutations
ICGC Data PortalSNX29P2 
TCGA Data PortalSNX29P2 
Broad Tumor PortalSNX29P2
OASIS PortalSNX29P2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX29P2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX29P2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX29P2
DgiDB (Drug Gene Interaction Database)SNX29P2
DoCM (Curated mutations)SNX29P2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX29P2 (select a term)
intoGenSNX29P2
Cancer3DSNX29P2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNX29P2
Genetic Testing Registry SNX29P2
NextProtQ8IUI4 [Medical]
TSGene440352
GENETestsSNX29P2
Target ValidationSNX29P2
Huge Navigator SNX29P2 [HugePedia]
snp3D : Map Gene to Disease440352
BioCentury BCIQSNX29P2
ClinGenSNX29P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440352
Chemical/Pharm GKB GenePA142670964
Clinical trialSNX29P2
Miscellaneous
canSAR (ICR)SNX29P2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX29P2
EVEXSNX29P2
GoPubMedSNX29P2
iHOPSNX29P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:35 CEST 2017

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