Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNX29P2 (sorting nexin 29 pseudogene 2)

Identity

Alias (NCBI)RUNDC2C
HGNC (Hugo) SNX29P2
HGNC Previous nameRUNDC2C
HGNC Previous nameRUN domain containing 2C
LocusID (NCBI) 440352
Atlas_Id 74059
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29302287 and ends at 29365059 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNX29P2 (16p11.2) / PLA2G10 (16p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SNX29P2   31914
Cards
Entrez_Gene (NCBI)SNX29P2    sorting nexin 29 pseudogene 2
AliasesRUNDC2C
GeneCards (Weizmann)SNX29P2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr16:29302287-29365059 [Contig_View]  SNX29P2 [Vega]
TCGA cBioPortalSNX29P2
AceView (NCBI)SNX29P2
Genatlas (Paris)SNX29P2
SOURCE (Princeton)SNX29P2
Genetics Home Reference (NIH)SNX29P2
Genomic and cartography
GoldenPath hg38 (UCSC)SNX29P2  -     chr16:29302287-29365059 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX29P2  -     16p11.2   [Description]    (hg19-Feb_2009)
GoldenPathSNX29P2 - 16p11.2 [CytoView hg19]  SNX29P2 - 16p11.2 [CytoView hg38]
Genome Data Viewer NCBISNX29P2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK023827 BC024293 BX648280
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX29P2
Gene ExpressionSNX29P2 [ NCBI-GEO ]   SNX29P2 [ EBI - ARRAY_EXPRESS ]   SNX29P2 [ SEEK ]   SNX29P2 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX29P2 [ Firebrowse - Broad ]
GenevisibleExpression of SNX29P2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440352
GTEX Portal (Tissue expression)SNX29P2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUI4
PhosPhoSitePlusQ8IUI4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNX29P2
SuperfamilyQ8IUI4
AlphaFold pdb e-kbQ8IUI4   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUI4
IntAct (EBI)Q8IUI4
BioGRIDSNX29P2
STRING (EMBL)SNX29P2
ZODIACSNX29P2
Ontologies - Pathways
QuickGOQ8IUI4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSNX29P2
Atlas of Cancer Signalling NetworkSNX29P2
Wikipedia pathwaysSNX29P2
Orthology - Evolution
OrthoDB440352
Phylogenetic Trees/Animal Genes : TreeFamSNX29P2
Homologs : HomoloGeneSNX29P2
Homology/Alignments : Family Browser (UCSC)SNX29P2
Gene fusions - Rearrangements
Fusion : QuiverSNX29P2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX29P2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX29P2
dbVarSNX29P2
ClinVarSNX29P2
MonarchSNX29P2
1000_GenomesSNX29P2 
Exome Variant ServerSNX29P2
Varsome BrowserSNX29P2
ACMGSNX29P2 variants
VarityQ8IUI4
Genomic Variants (DGV)SNX29P2 [DGVbeta]
DECIPHERSNX29P2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX29P2 
Mutations
ICGC Data PortalSNX29P2 
TCGA Data PortalSNX29P2 
Broad Tumor PortalSNX29P2
OASIS PortalSNX29P2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSNX29P2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSNX29P2
DgiDB (Drug Gene Interaction Database)SNX29P2
DoCM (Curated mutations)SNX29P2
CIViC (Clinical Interpretations of Variants in Cancer)SNX29P2
Cancer3DSNX29P2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSNX29P2
MedgenSNX29P2
Genetic Testing Registry SNX29P2
NextProtQ8IUI4 [Medical]
GENETestsSNX29P2
Target ValidationSNX29P2
Huge Navigator SNX29P2 [HugePedia]
ClinGenSNX29P2
Clinical trials, drugs, therapy
MyCancerGenomeSNX29P2
Protein Interactions : CTDSNX29P2
Pharm GKB GenePA142670964
PharosQ8IUI4
Clinical trialSNX29P2
Miscellaneous
canSAR (ICR)SNX29P2
HarmonizomeSNX29P2
DataMed IndexSNX29P2
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSNX29P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:23:38 CEST 2021

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