Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNX30 (sorting nexin family member 30)

Identity

Alias_symbol (synonym)ATG24A
Other alias
HGNC (Hugo) SNX30
LocusID (NCBI) 401548
Atlas_Id 54652
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 112750854 and ends at 112874987 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADAMTS3 (4q13.3) / SNX30 (9q32)ANKRD18B (9p13.3) / SNX30 (9q32)KIAA1958 (9q32) / SNX30 (9q32)
SNX30 (9q32) / ADAMTS3 (4q13.3)SNX30 (9q32) / ALDOB (9q31.1)SNX30 (9q32) / CNTLN (9p22.2)
SNX30 (9q32) / DENND1A (9q33.3)SNX30 (9q32) / EXOC4 (7q33)SNX30 (9q32) / KIAA1958 (9q32)
SNX30 (9q32) / LPAR1 (9q31.3)ANKRD18B 9p13.3 / SNX30 9q32SNX30 9q32 / ALDOB 9q31.1
SNX30 9q32 / CNTLN 9p22.2SNX30 9q32 / DENND1A 9q33.3SNX30 9q32 / KIAA1958 9q32
SNX30 9q32 / LPAR1 9q31.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)SNX30   23685
Cards
Entrez_Gene (NCBI)SNX30  401548  sorting nexin family member 30
AliasesATG24A
GeneCards (Weizmann)SNX30
Ensembl hg19 (Hinxton)ENSG00000148158 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148158 [Gene_View]  chr9:112750854-112874987 [Contig_View]  SNX30 [Vega]
ICGC DataPortalENSG00000148158
TCGA cBioPortalSNX30
AceView (NCBI)SNX30
Genatlas (Paris)SNX30
WikiGenes401548
SOURCE (Princeton)SNX30
Genetics Home Reference (NIH)SNX30
Genomic and cartography
GoldenPath hg38 (UCSC)SNX30  -     chr9:112750854-112874987 +  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX30  -     9q32   [Description]    (hg19-Feb_2009)
EnsemblSNX30 - 9q32 [CytoView hg19]  SNX30 - 9q32 [CytoView hg38]
Mapping of homologs : NCBISNX30 [Mapview hg19]  SNX30 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA401207 AK091599 AK092908 AK126644 AK127013
RefSeq transcript (Entrez)NM_001012994
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX30
Cluster EST : UnigeneHs.522350 [ NCBI ]
CGAP (NCI)Hs.522350
Alternative Splicing GalleryENSG00000148158
Gene ExpressionSNX30 [ NCBI-GEO ]   SNX30 [ EBI - ARRAY_EXPRESS ]   SNX30 [ SEEK ]   SNX30 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401548
GTEX Portal (Tissue expression)SNX30
Human Protein AtlasENSG00000148158-SNX30 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWJ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWJ9
Splice isoforms : SwissVarQ5VWJ9
PhosPhoSitePlusQ5VWJ9
Domaine pattern : Prosite (Expaxy)PX (PS50195)   
Domains : Interpro (EBI)BAR_dom    Phox    SNX30   
Domain families : Pfam (Sanger)BAR (PF03114)    PX (PF00787)   
Domain families : Pfam (NCBI)pfam03114    pfam00787   
Domain families : Smart (EMBL)PX (SM00312)  
Conserved Domain (NCBI)SNX30
DMDM Disease mutations401548
Blocks (Seattle)SNX30
SuperfamilyQ5VWJ9
Human Protein Atlas [tissue]ENSG00000148158-SNX30 [tissue]
Peptide AtlasQ5VWJ9
IPIIPI00855946   IPI00746411   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWJ9
IntAct (EBI)Q5VWJ9
FunCoupENSG00000148158
BioGRIDSNX30
STRING (EMBL)SNX30
ZODIACSNX30
Ontologies - Pathways
QuickGOQ5VWJ9
Ontology : AmiGOprotein binding  endosome  endocytosis  protein transport  vesicle organization  extrinsic component of membrane  phosphatidylinositol binding  
Ontology : EGO-EBIprotein binding  endosome  endocytosis  protein transport  vesicle organization  extrinsic component of membrane  phosphatidylinositol binding  
NDEx NetworkSNX30
Atlas of Cancer Signalling NetworkSNX30
Wikipedia pathwaysSNX30
Orthology - Evolution
OrthoDB401548
GeneTree (enSembl)ENSG00000148158
Phylogenetic Trees/Animal Genes : TreeFamSNX30
HOVERGENQ5VWJ9
HOGENOMQ5VWJ9
Homologs : HomoloGeneSNX30
Homology/Alignments : Family Browser (UCSC)SNX30
Gene fusions - Rearrangements
Fusion : MitelmanADAMTS3/SNX30 [4q13.3/9q32]  [t(4;9)(q13;q32)]  
Fusion : MitelmanANKRD18B/SNX30 [9p13.3/9q32]  [t(9;9)(p13;q32)]  
Fusion : MitelmanSNX30/ADAMTS3 [9q32/4q13.3]  [t(4;9)(q13;q32)]  
Fusion : MitelmanSNX30/ALDOB [9q32/9q31.1]  [t(9;9)(q31;q32)]  
Fusion : MitelmanSNX30/CNTLN [9q32/9p22.2]  [t(9;9)(p22;q32)]  
Fusion : MitelmanSNX30/DENND1A [9q32/9q33.3]  [t(9;9)(q32;q33)]  
Fusion : MitelmanSNX30/LPAR1 [9q32/9q31.3]  [t(9;9)(q31;q32)]  
Fusion: TCGA_MDACCANKRD18B 9p13.3 SNX30 9q32 LUAD
Fusion: TCGA_MDACCSNX30 9q32 ALDOB 9q31.1 PRAD
Fusion: TCGA_MDACCSNX30 9q32 CNTLN 9p22.2 HNSC
Fusion: TCGA_MDACCSNX30 9q32 DENND1A 9q33.3 BRCA
Fusion: TCGA_MDACCSNX30 9q32 KIAA1958 9q32 BLCA PRAD
Fusion: TCGA_MDACCSNX30 9q32 LPAR1 9q31.3 LGG
Tumor Fusion PortalSNX30
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX30
dbVarSNX30
ClinVarSNX30
1000_GenomesSNX30 
Exome Variant ServerSNX30
ExAC (Exome Aggregation Consortium)ENSG00000148158
GNOMAD BrowserENSG00000148158
Genetic variants : HAPMAP401548
Genomic Variants (DGV)SNX30 [DGVbeta]
DECIPHERSNX30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX30 
Mutations
ICGC Data PortalSNX30 
TCGA Data PortalSNX30 
Broad Tumor PortalSNX30
OASIS PortalSNX30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX30  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX30
DgiDB (Drug Gene Interaction Database)SNX30
DoCM (Curated mutations)SNX30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX30 (select a term)
intoGenSNX30
Cancer3DSNX30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSNX30
MedgenSNX30
Genetic Testing Registry SNX30
NextProtQ5VWJ9 [Medical]
TSGene401548
GENETestsSNX30
Target ValidationSNX30
Huge Navigator SNX30 [HugePedia]
snp3D : Map Gene to Disease401548
BioCentury BCIQSNX30
ClinGenSNX30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401548
Chemical/Pharm GKB GenePA142670889
Clinical trialSNX30
Miscellaneous
canSAR (ICR)SNX30 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX30
EVEXSNX30
GoPubMedSNX30
iHOPSNX30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:35:55 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.