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SNX31 (sorting nexin 31)

Identity

Alias_symbol (synonym)MGC39715
Other alias-
HGNC (Hugo) SNX31
LocusID (NCBI) 169166
Atlas_Id 74060
Location 8q22.3  [Link to chromosome band 8q22]
Location_base_pair Starts at 100572884 and ends at 100649665 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATXN2L (16p11.2) / SNX31 (8q22.2)MTDH (8q22.1) / SNX31 (8q22.2)RNF19A (8q22.2) / SNX31 (8q22.2)
SNX31 (8q22.2) / PABPC1 (8q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX31   28605
Cards
Entrez_Gene (NCBI)SNX31  169166  sorting nexin 31
Aliases
GeneCards (Weizmann)SNX31
Ensembl hg19 (Hinxton)ENSG00000174226 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174226 [Gene_View]  chr8:100572884-100649665 [Contig_View]  SNX31 [Vega]
ICGC DataPortalENSG00000174226
TCGA cBioPortalSNX31
AceView (NCBI)SNX31
Genatlas (Paris)SNX31
WikiGenes169166
SOURCE (Princeton)SNX31
Genetics Home Reference (NIH)SNX31
Genomic and cartography
GoldenPath hg38 (UCSC)SNX31  -     chr8:100572884-100649665 -  8q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX31  -     8q22.3   [Description]    (hg19-Feb_2009)
EnsemblSNX31 - 8q22.3 [CytoView hg19]  SNX31 - 8q22.3 [CytoView hg38]
Mapping of homologs : NCBISNX31 [Mapview hg19]  SNX31 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093906 BC031260 BQ012274 CD106024
RefSeq transcript (Entrez)NM_152628
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX31
Cluster EST : UnigeneHs.567758 [ NCBI ]
CGAP (NCI)Hs.567758
Alternative Splicing GalleryENSG00000174226
Gene ExpressionSNX31 [ NCBI-GEO ]   SNX31 [ EBI - ARRAY_EXPRESS ]   SNX31 [ SEEK ]   SNX31 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)169166
GTEX Portal (Tissue expression)SNX31
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9S9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9S9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9S9
Splice isoforms : SwissVarQ8N9S9
PhosPhoSitePlusQ8N9S9
Domaine pattern : Prosite (Expaxy)PX (PS50195)   
Domains : Interpro (EBI)Phox   
Domain families : Pfam (Sanger)PX (PF00787)   
Domain families : Pfam (NCBI)pfam00787   
Domain families : Smart (EMBL)PX (SM00312)  
Conserved Domain (NCBI)SNX31
DMDM Disease mutations169166
Blocks (Seattle)SNX31
SuperfamilyQ8N9S9
Human Protein AtlasENSG00000174226
Peptide AtlasQ8N9S9
HPRD17545
IPIIPI00550727   IPI00796119   IPI00984291   IPI00975956   IPI00974345   IPI00974333   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9S9
IntAct (EBI)Q8N9S9
FunCoupENSG00000174226
BioGRIDSNX31
STRING (EMBL)SNX31
ZODIACSNX31
Ontologies - Pathways
QuickGOQ8N9S9
Ontology : AmiGOprotein binding  early endosome  intracellular protein transport  phosphatidylinositol binding  protein complex  retrograde transport, endosome to plasma membrane  
Ontology : EGO-EBIprotein binding  early endosome  intracellular protein transport  phosphatidylinositol binding  protein complex  retrograde transport, endosome to plasma membrane  
NDEx NetworkSNX31
Atlas of Cancer Signalling NetworkSNX31
Wikipedia pathwaysSNX31
Orthology - Evolution
OrthoDB169166
GeneTree (enSembl)ENSG00000174226
Phylogenetic Trees/Animal Genes : TreeFamSNX31
HOVERGENQ8N9S9
HOGENOMQ8N9S9
Homologs : HomoloGeneSNX31
Homology/Alignments : Family Browser (UCSC)SNX31
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX31
dbVarSNX31
ClinVarSNX31
1000_GenomesSNX31 
Exome Variant ServerSNX31
ExAC (Exome Aggregation Consortium)SNX31 (select the gene name)
Genetic variants : HAPMAP169166
Genomic Variants (DGV)SNX31 [DGVbeta]
DECIPHERSNX31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX31 
Mutations
ICGC Data PortalSNX31 
TCGA Data PortalSNX31 
Broad Tumor PortalSNX31
OASIS PortalSNX31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX31
DgiDB (Drug Gene Interaction Database)SNX31
DoCM (Curated mutations)SNX31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX31 (select a term)
intoGenSNX31
Cancer3DSNX31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNX31
Genetic Testing Registry SNX31
NextProtQ8N9S9 [Medical]
TSGene169166
GENETestsSNX31
Target ValidationSNX31
Huge Navigator SNX31 [HugePedia]
snp3D : Map Gene to Disease169166
BioCentury BCIQSNX31
ClinGenSNX31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD169166
Chemical/Pharm GKB GenePA162404313
Clinical trialSNX31
Miscellaneous
canSAR (ICR)SNX31 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX31
EVEXSNX31
GoPubMedSNX31
iHOPSNX31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:36 CEST 2017

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