Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNX32 (sorting nexin 32)

Identity

Alias_namesSNX6B
sorting nexin 6B
Alias_symbol (synonym)FLJ30934
Other alias
HGNC (Hugo) SNX32
LocusID (NCBI) 254122
Atlas_Id 74061
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65833939 and ends at 65853701 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX32   26423
Cards
Entrez_Gene (NCBI)SNX32  254122  sorting nexin 32
AliasesSNX6B
GeneCards (Weizmann)SNX32
Ensembl hg19 (Hinxton)ENSG00000172803 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172803 [Gene_View]  chr11:65833939-65853701 [Contig_View]  SNX32 [Vega]
ICGC DataPortalENSG00000172803
TCGA cBioPortalSNX32
AceView (NCBI)SNX32
Genatlas (Paris)SNX32
WikiGenes254122
SOURCE (Princeton)SNX32
Genetics Home Reference (NIH)SNX32
Genomic and cartography
GoldenPath hg38 (UCSC)SNX32  -     chr11:65833939-65853701 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX32  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblSNX32 - 11q13.1 [CytoView hg19]  SNX32 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBISNX32 [Mapview hg19]  SNX32 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055496 AK289587 AK293827 AK296055 AK299512
RefSeq transcript (Entrez)NM_152760
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX32
Cluster EST : UnigeneHs.591950 [ NCBI ]
CGAP (NCI)Hs.591950
Alternative Splicing GalleryENSG00000172803
Gene ExpressionSNX32 [ NCBI-GEO ]   SNX32 [ EBI - ARRAY_EXPRESS ]   SNX32 [ SEEK ]   SNX32 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254122
GTEX Portal (Tissue expression)SNX32
Human Protein AtlasENSG00000172803-SNX32 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XE0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XE0
Splice isoforms : SwissVarQ86XE0
PhosPhoSitePlusQ86XE0
Domaine pattern : Prosite (Expaxy)PX (PS50195)   
Domains : Interpro (EBI)Phox    SNX5/SNX6/SNX32    Vps5_C   
Domain families : Pfam (Sanger)PX (PF00787)    Vps5 (PF09325)   
Domain families : Pfam (NCBI)pfam00787    pfam09325   
Conserved Domain (NCBI)SNX32
DMDM Disease mutations254122
Blocks (Seattle)SNX32
SuperfamilyQ86XE0
Human Protein Atlas [tissue]ENSG00000172803-SNX32 [tissue]
Peptide AtlasQ86XE0
HPRD08090
IPIIPI00396025   IPI00885014   IPI00911116   IPI00909887   
Protein Interaction databases
DIP (DOE-UCLA)Q86XE0
IntAct (EBI)Q86XE0
FunCoupENSG00000172803
BioGRIDSNX32
STRING (EMBL)SNX32
ZODIACSNX32
Ontologies - Pathways
QuickGOQ86XE0
Ontology : AmiGOprotein binding  endosome  endocytosis  protein transport  vesicle organization  regulation of macroautophagy  extrinsic component of membrane  phosphatidylinositol binding  
Ontology : EGO-EBIprotein binding  endosome  endocytosis  protein transport  vesicle organization  regulation of macroautophagy  extrinsic component of membrane  phosphatidylinositol binding  
NDEx NetworkSNX32
Atlas of Cancer Signalling NetworkSNX32
Wikipedia pathwaysSNX32
Orthology - Evolution
OrthoDB254122
GeneTree (enSembl)ENSG00000172803
Phylogenetic Trees/Animal Genes : TreeFamSNX32
HOVERGENQ86XE0
HOGENOMQ86XE0
Homologs : HomoloGeneSNX32
Homology/Alignments : Family Browser (UCSC)SNX32
Gene fusions - Rearrangements
Fusion: Tumor Portal SNX32
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX32
dbVarSNX32
ClinVarSNX32
1000_GenomesSNX32 
Exome Variant ServerSNX32
ExAC (Exome Aggregation Consortium)ENSG00000172803
GNOMAD BrowserENSG00000172803
Genetic variants : HAPMAP254122
Genomic Variants (DGV)SNX32 [DGVbeta]
DECIPHERSNX32 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX32 
Mutations
ICGC Data PortalSNX32 
TCGA Data PortalSNX32 
Broad Tumor PortalSNX32
OASIS PortalSNX32 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX32  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX32
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX32
DgiDB (Drug Gene Interaction Database)SNX32
DoCM (Curated mutations)SNX32 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX32 (select a term)
intoGenSNX32
Cancer3DSNX32(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNX32
Genetic Testing Registry SNX32
NextProtQ86XE0 [Medical]
TSGene254122
GENETestsSNX32
Target ValidationSNX32
Huge Navigator SNX32 [HugePedia]
snp3D : Map Gene to Disease254122
BioCentury BCIQSNX32
ClinGenSNX32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254122
Chemical/Pharm GKB GenePA162404314
Clinical trialSNX32
Miscellaneous
canSAR (ICR)SNX32 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX32
EVEXSNX32
GoPubMedSNX32
iHOPSNX32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:30:24 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.