SNX6 (sorting nexin 6)

Identity

Other names	MGC3157
	MSTP010
	TFAF2
HGNC	SNX6
Location	14q13.2
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	SNX6   14970
Entrez_Gene	SNX6  58533  sorting nexin 6
	Cards
GeneCards	SNX6
Ensembl	SNX6 [Search_View]   ENSG00000129515 [Gene_View]
Genatlas	SNX6
GeneLynx	SNX6
eGenome	SNX6
euGene	58533
	Genomic and cartography
GoldenPath	SNX6  -  14q13.2   chr14:34100369-34169066 -  14q13.2   [Description]    (hg18-March_2006)
Ensembl	SNX6 - 14q13.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	SNX6
	Gene and transcription
Genbank	AF109364 [ ENTREZ ]
Genbank	AF121856 [ ENTREZ ]
Genbank	AK021456 [ ENTREZ ]
Genbank	AK124315 [ ENTREZ ]
Genbank	AK292250 [ ENTREZ ]
RefSeq	NM_021249 [ SRS ]    NM_021249 [ ENTREZ ]
RefSeq	NM_152233 [ SRS ]    NM_152233 [ ENTREZ ]
RefSeq	AC_000057 [ SRS ]    AC_000057 [ ENTREZ ]
RefSeq	AC_000146 [ SRS ]    AC_000146 [ ENTREZ ]
RefSeq	NC_000014 [ SRS ]    NC_000014 [ ENTREZ ]
RefSeq	NT_026437 [ SRS ]    NT_026437 [ ENTREZ ]
RefSeq	NW_001838110 [ SRS ]    NW_001838110 [ ENTREZ ]
RefSeq	NW_925539 [ SRS ]    NW_925539 [ ENTREZ ]
AceView	SNX6 AceView - NCBI
Unigene	Hs.583855 [ SRS ]    Hs.583855 [ NCBI ]     HS583855 [ spliceNest ]
Fast-db	142 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q5QTQ6 [ SRS]    Q5QTQ6 [ EXPASY ]     Q5QTQ6 [ INTERPRO ]     Q5QTQ6 [ UNIPROT ]
Interpro	IPR015404 Vps5 [ SRS ]    IPR015404 Vps5 [ EBI ]
CluSTr	Q5QTQ6
Pfam	PF09325 Vps5 [ SRS ]    PF09325 Vps5 [ Sanger ]    pfam09325 [ NCBI-CDD ]
Blocks	Q5QTQ6
HPRD	12086
	Protein Interaction databases
DIP	Q5QTQ6
IntAct	Q5QTQ6
	Polymorphism : SNP, mutations, diseases
OMIM	606098    [ map ]
GENECLINICS	606098
SNP	SNX6 [dbSNP-NCBI]
SNP	NM_021249 [SNP-NCI]
SNP	NM_152233 [SNP-NCI]
SNP	SNX6 [GeneSNPs - Utah]  SNX6] [HGBASE - SRS]
HAPMAP	SNX6 [HAPMAP]
COSMIC	SNX6 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	SNX6
	General knowledge
Family Browser	SNX6 [UCSC Family Browser]
SOURCE	NM_021249
SOURCE	NM_152233
SMD	Hs.583855
SAGE	Hs.583855
GO	protein binding [Amigo]  protein binding
GO	protein binding [Amigo]  protein binding
GO	intracellular [Amigo]  intracellular
GO	cytoplasm [Amigo]  cytoplasm
GO	intracellular protein transport [Amigo]  intracellular protein transport
GO	cell communication [Amigo]  cell communication
GO	negative regulation of epidermal growth factor receptor activity [Amigo]  negative regulation of epidermal growth factor receptor activity
GO	negative regulation of transcription [Amigo]  negative regulation of transcription
GO	negative regulation of transforming growth factor beta receptor signaling pathway [Amigo]  negative regulation of transforming growth factor beta receptor signaling pathway
GO	phosphoinositide binding [Amigo]  phosphoinositide binding
GO	protein homodimerization activity [Amigo]  protein homodimerization activity
PubGene	SNX6
TreeFam	SNX6
CTD	58533 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	SNX6 Related clones (RZPD - Berlin)
	PubMed
PubMed	6 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:32:50 2008