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SNX7 (sorting nexin 7)

Identity

Other alias-
HGNC (Hugo) SNX7
LocusID (NCBI) 51375
Atlas_Id 74063
Location 1p21.3  [Link to chromosome band 1p21]
Location_base_pair Starts at 98661680 and ends at 98760500 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNX7 (1p21.3) / SERPINA3 (14q32.13)SNX7 (1p21.3) / SPATS2L (2q33.1)SPIDR (8q11.21) / SNX7 (1p21.3)
ZCCHC14 (16q24.2) / SNX7 (1p21.3)ZCCHC14 SNX7KIAA0146 SNX7

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX7   14971
Cards
Entrez_Gene (NCBI)SNX7  51375  sorting nexin 7
Aliases
GeneCards (Weizmann)SNX7
Ensembl hg19 (Hinxton)ENSG00000162627 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162627 [Gene_View]  chr1:98661680-98760500 [Contig_View]  SNX7 [Vega]
ICGC DataPortalENSG00000162627
TCGA cBioPortalSNX7
AceView (NCBI)SNX7
Genatlas (Paris)SNX7
WikiGenes51375
SOURCE (Princeton)SNX7
Genetics Home Reference (NIH)SNX7
Genomic and cartography
GoldenPath hg38 (UCSC)SNX7  -     chr1:98661680-98760500 +  1p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX7  -     1p21.3   [Description]    (hg19-Feb_2009)
EnsemblSNX7 - 1p21.3 [CytoView hg19]  SNX7 - 1p21.3 [CytoView hg38]
Mapping of homologs : NCBISNX7 [Mapview hg19]  SNX7 [Mapview hg38]
OMIM614904   
Gene and transcription
Genbank (Entrez)AF121857 AK025031 AK223229 AK293018 AK298211
RefSeq transcript (Entrez)NM_015976 NM_152238
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX7
Cluster EST : UnigeneHs.197015 [ NCBI ]
CGAP (NCI)Hs.197015
Alternative Splicing GalleryENSG00000162627
Gene ExpressionSNX7 [ NCBI-GEO ]   SNX7 [ EBI - ARRAY_EXPRESS ]   SNX7 [ SEEK ]   SNX7 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51375
GTEX Portal (Tissue expression)SNX7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNH6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNH6
Splice isoforms : SwissVarQ9UNH6
PhosPhoSitePlusQ9UNH6
Domaine pattern : Prosite (Expaxy)PX (PS50195)   
Domains : Interpro (EBI)Phox    SNX7   
Domain families : Pfam (Sanger)PX (PF00787)   
Domain families : Pfam (NCBI)pfam00787   
Domain families : Smart (EMBL)PX (SM00312)  
Conserved Domain (NCBI)SNX7
DMDM Disease mutations51375
Blocks (Seattle)SNX7
PDB (SRS)3IQ2   
PDB (PDBSum)3IQ2   
PDB (IMB)3IQ2   
PDB (RSDB)3IQ2   
Structural Biology KnowledgeBase3IQ2   
SCOP (Structural Classification of Proteins)3IQ2   
CATH (Classification of proteins structures)3IQ2   
SuperfamilyQ9UNH6
Human Protein AtlasENSG00000162627
Peptide AtlasQ9UNH6
HPRD15416
IPIIPI00942419   IPI00216576   IPI00009203   IPI00975468   IPI00976230   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNH6
IntAct (EBI)Q9UNH6
FunCoupENSG00000162627
BioGRIDSNX7
STRING (EMBL)SNX7
ZODIACSNX7
Ontologies - Pathways
QuickGOQ9UNH6
Ontology : AmiGOprotein binding  endosome  endocytosis  protein transport  vesicle organization  extrinsic component of membrane  cytoplasmic vesicle membrane  phosphatidylinositol binding  
Ontology : EGO-EBIprotein binding  endosome  endocytosis  protein transport  vesicle organization  extrinsic component of membrane  cytoplasmic vesicle membrane  phosphatidylinositol binding  
NDEx NetworkSNX7
Atlas of Cancer Signalling NetworkSNX7
Wikipedia pathwaysSNX7
Orthology - Evolution
OrthoDB51375
GeneTree (enSembl)ENSG00000162627
Phylogenetic Trees/Animal Genes : TreeFamSNX7
HOVERGENQ9UNH6
HOGENOMQ9UNH6
Homologs : HomoloGeneSNX7
Homology/Alignments : Family Browser (UCSC)SNX7
Gene fusions - Rearrangements
Fusion: TCGAZCCHC14 SNX7
Fusion: TCGAKIAA0146 SNX7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX7
dbVarSNX7
ClinVarSNX7
1000_GenomesSNX7 
Exome Variant ServerSNX7
ExAC (Exome Aggregation Consortium)SNX7 (select the gene name)
Genetic variants : HAPMAP51375
Genomic Variants (DGV)SNX7 [DGVbeta]
DECIPHERSNX7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX7 
Mutations
ICGC Data PortalSNX7 
TCGA Data PortalSNX7 
Broad Tumor PortalSNX7
OASIS PortalSNX7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX7
DgiDB (Drug Gene Interaction Database)SNX7
DoCM (Curated mutations)SNX7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX7 (select a term)
intoGenSNX7
Cancer3DSNX7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614904   
Orphanet
MedgenSNX7
Genetic Testing Registry SNX7
NextProtQ9UNH6 [Medical]
TSGene51375
GENETestsSNX7
Target ValidationSNX7
Huge Navigator SNX7 [HugePedia]
snp3D : Map Gene to Disease51375
BioCentury BCIQSNX7
ClinGenSNX7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51375
Chemical/Pharm GKB GenePA37947
Clinical trialSNX7
Miscellaneous
canSAR (ICR)SNX7 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX7
EVEXSNX7
GoPubMedSNX7
iHOPSNX7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:36 CEST 2017

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