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SNX8 (sorting nexin 8)

Identity

Alias_symbol (synonym)Mvp1
Other alias
HGNC (Hugo) SNX8
LocusID (NCBI) 29886
Atlas_Id 74064
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 2251770 and ends at 2314475 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNX8 (7p22.3) / KDELR2 (7p22.1)SNX8 (7p22.3) / SNX8 (7p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNX8   14972
Cards
Entrez_Gene (NCBI)SNX8  29886  sorting nexin 8
AliasesMvp1
GeneCards (Weizmann)SNX8
Ensembl hg19 (Hinxton)ENSG00000106266 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106266 [Gene_View]  chr7:2251770-2314475 [Contig_View]  SNX8 [Vega]
ICGC DataPortalENSG00000106266
TCGA cBioPortalSNX8
AceView (NCBI)SNX8
Genatlas (Paris)SNX8
WikiGenes29886
SOURCE (Princeton)SNX8
Genetics Home Reference (NIH)SNX8
Genomic and cartography
GoldenPath hg38 (UCSC)SNX8  -     chr7:2251770-2314475 -  7p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNX8  -     7p22.3   [Description]    (hg19-Feb_2009)
EnsemblSNX8 - 7p22.3 [CytoView hg19]  SNX8 - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBISNX8 [Mapview hg19]  SNX8 [Mapview hg38]
OMIM614905   
Gene and transcription
Genbank (Entrez)AF121858 AK074544 AK315670 AL713633 BC007785
RefSeq transcript (Entrez)NM_013321
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNX8
Cluster EST : UnigeneHs.584900 [ NCBI ]
CGAP (NCI)Hs.584900
Alternative Splicing GalleryENSG00000106266
Gene ExpressionSNX8 [ NCBI-GEO ]   SNX8 [ EBI - ARRAY_EXPRESS ]   SNX8 [ SEEK ]   SNX8 [ MEM ]
Gene Expression Viewer (FireBrowse)SNX8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29886
GTEX Portal (Tissue expression)SNX8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5X2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5X2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5X2
Splice isoforms : SwissVarQ9Y5X2
PhosPhoSitePlusQ9Y5X2
Domaine pattern : Prosite (Expaxy)PX (PS50195)   
Domains : Interpro (EBI)Phox   
Domain families : Pfam (Sanger)PX (PF00787)   
Domain families : Pfam (NCBI)pfam00787   
Domain families : Smart (EMBL)PX (SM00312)  
Conserved Domain (NCBI)SNX8
DMDM Disease mutations29886
Blocks (Seattle)SNX8
SuperfamilyQ9Y5X2
Human Protein AtlasENSG00000106266
Peptide AtlasQ9Y5X2
HPRD11592
IPIIPI00001885   IPI00893569   IPI00893702   IPI00893294   IPI00893439   IPI00893028   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5X2
IntAct (EBI)Q9Y5X2
FunCoupENSG00000106266
BioGRIDSNX8
STRING (EMBL)SNX8
ZODIACSNX8
Ontologies - Pathways
QuickGOQ9Y5X2
Ontology : AmiGOprotein binding  cytosol  intracellular protein transport  endocytosis  vesicle organization  extrinsic component of membrane  retromer complex  early endosome membrane  early endosome to Golgi transport  phosphatidylinositol binding  identical protein binding  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein binding  cytosol  intracellular protein transport  endocytosis  vesicle organization  extrinsic component of membrane  retromer complex  early endosome membrane  early endosome to Golgi transport  phosphatidylinositol binding  identical protein binding  intracellular membrane-bounded organelle  
NDEx NetworkSNX8
Atlas of Cancer Signalling NetworkSNX8
Wikipedia pathwaysSNX8
Orthology - Evolution
OrthoDB29886
GeneTree (enSembl)ENSG00000106266
Phylogenetic Trees/Animal Genes : TreeFamSNX8
HOVERGENQ9Y5X2
HOGENOMQ9Y5X2
Homologs : HomoloGeneSNX8
Homology/Alignments : Family Browser (UCSC)SNX8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNX8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNX8
dbVarSNX8
ClinVarSNX8
1000_GenomesSNX8 
Exome Variant ServerSNX8
ExAC (Exome Aggregation Consortium)SNX8 (select the gene name)
Genetic variants : HAPMAP29886
Genomic Variants (DGV)SNX8 [DGVbeta]
DECIPHERSNX8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNX8 
Mutations
ICGC Data PortalSNX8 
TCGA Data PortalSNX8 
Broad Tumor PortalSNX8
OASIS PortalSNX8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNX8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNX8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNX8
DgiDB (Drug Gene Interaction Database)SNX8
DoCM (Curated mutations)SNX8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNX8 (select a term)
intoGenSNX8
Cancer3DSNX8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614905   
Orphanet
MedgenSNX8
Genetic Testing Registry SNX8
NextProtQ9Y5X2 [Medical]
TSGene29886
GENETestsSNX8
Target ValidationSNX8
Huge Navigator SNX8 [HugePedia]
snp3D : Map Gene to Disease29886
BioCentury BCIQSNX8
ClinGenSNX8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29886
Chemical/Pharm GKB GenePA37948
Clinical trialSNX8
Miscellaneous
canSAR (ICR)SNX8 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNX8
EVEXSNX8
GoPubMedSNX8
iHOPSNX8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:37 CEST 2017

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