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SOBP (sine oculis binding protein homolog (Drosophila))

Identity

Alias_namessine oculis binding protein homolog (Drosophila)
Alias_symbol (synonym)FLJ10159
Other aliasJXC1
MRAMS
HGNC (Hugo) SOBP
LocusID (NCBI) 55084
Atlas_Id 74065
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 107811317 and ends at 107982513 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FBRS (16p11.2) / SOBP (6q21)REV3L (6q21) / SOBP (6q21)SOBP (6q21) / ABCA9 (17q24.2)
SOBP (6q21) / AIM1 (6q21)SOBP (6q21) / MET (7q31.2)SOBP ABCA9
SOBP AIM1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOBP   29256
Cards
Entrez_Gene (NCBI)SOBP  55084  sine oculis binding protein homolog (Drosophila)
AliasesJXC1; MRAMS
GeneCards (Weizmann)SOBP
Ensembl hg19 (Hinxton)ENSG00000112320 [Gene_View]  chr6:107811317-107982513 [Contig_View]  SOBP [Vega]
Ensembl hg38 (Hinxton)ENSG00000112320 [Gene_View]  chr6:107811317-107982513 [Contig_View]  SOBP [Vega]
ICGC DataPortalENSG00000112320
TCGA cBioPortalSOBP
AceView (NCBI)SOBP
Genatlas (Paris)SOBP
WikiGenes55084
SOURCE (Princeton)SOBP
Genetics Home Reference (NIH)SOBP
Genomic and cartography
GoldenPath hg19 (UCSC)SOBP  -     chr6:107811317-107982513 +  6q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SOBP  -     6q21   [Description]    (hg38-Dec_2013)
EnsemblSOBP - 6q21 [CytoView hg19]  SOBP - 6q21 [CytoView hg38]
Mapping of homologs : NCBISOBP [Mapview hg19]  SOBP [Mapview hg38]
OMIM613667   613671   
Gene and transcription
Genbank (Entrez)AK090879 BC014859 BC091526 BC113966 BM684094
RefSeq transcript (Entrez)NM_018013
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_028200 NT_025741 NW_004929328
Consensus coding sequences : CCDS (NCBI)SOBP
Cluster EST : UnigeneHs.445244 [ NCBI ]
CGAP (NCI)Hs.445244
Alternative Splicing GalleryENSG00000112320
Gene ExpressionSOBP [ NCBI-GEO ]   SOBP [ EBI - ARRAY_EXPRESS ]   SOBP [ SEEK ]   SOBP [ MEM ]
Gene Expression Viewer (FireBrowse)SOBP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55084
GTEX Portal (Tissue expression)SOBP
Protein : pattern, domain, 3D structure
UniProt/SwissProtA7XYQ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA7XYQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA7XYQ1
Splice isoforms : SwissVarA7XYQ1
PhosPhoSitePlusA7XYQ1
Domains : Interpro (EBI)RAI2/SOBP   
Domain families : Pfam (Sanger)SOBP (PF15279)   
Domain families : Pfam (NCBI)pfam15279   
Conserved Domain (NCBI)SOBP
DMDM Disease mutations55084
Blocks (Seattle)SOBP
SuperfamilyA7XYQ1
Human Protein AtlasENSG00000112320
Peptide AtlasA7XYQ1
HPRD07650
IPIIPI00166365   IPI00747475   IPI00556064   
Protein Interaction databases
DIP (DOE-UCLA)A7XYQ1
IntAct (EBI)A7XYQ1
FunCoupENSG00000112320
BioGRIDSOBP
STRING (EMBL)SOBP
ZODIACSOBP
Ontologies - Pathways
QuickGOA7XYQ1
Ontology : AmiGOsensory perception of sound  locomotory behavior  SUMO polymer binding  inner ear morphogenesis  metal ion binding  
Ontology : EGO-EBIsensory perception of sound  locomotory behavior  SUMO polymer binding  inner ear morphogenesis  metal ion binding  
NDEx NetworkSOBP
Atlas of Cancer Signalling NetworkSOBP
Wikipedia pathwaysSOBP
Orthology - Evolution
OrthoDB55084
GeneTree (enSembl)ENSG00000112320
Phylogenetic Trees/Animal Genes : TreeFamSOBP
HOVERGENA7XYQ1
HOGENOMA7XYQ1
Homologs : HomoloGeneSOBP
Homology/Alignments : Family Browser (UCSC)SOBP
Gene fusions - Rearrangements
Fusion: TCGASOBP ABCA9
Fusion: TCGASOBP AIM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSOBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SOBP
dbVarSOBP
ClinVarSOBP
1000_GenomesSOBP 
Exome Variant ServerSOBP
ExAC (Exome Aggregation Consortium)SOBP (select the gene name)
Genetic variants : HAPMAP55084
Genomic Variants (DGV)SOBP [DGVbeta]
DECIPHER (Syndromes)6:107811317-107982513  ENSG00000112320
CONAN: Copy Number AnalysisSOBP 
Mutations
ICGC Data PortalSOBP 
TCGA Data PortalSOBP 
Broad Tumor PortalSOBP
OASIS PortalSOBP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSOBP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSOBP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SOBP
DgiDB (Drug Gene Interaction Database)SOBP
DoCM (Curated mutations)SOBP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SOBP (select a term)
intoGenSOBP
Cancer3DSOBP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613667    613671   
Orphanet
MedgenSOBP
Genetic Testing Registry SOBP
NextProtA7XYQ1 [Medical]
TSGene55084
GENETestsSOBP
Huge Navigator SOBP [HugePedia]
snp3D : Map Gene to Disease55084
BioCentury BCIQSOBP
ClinGenSOBP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55084
Chemical/Pharm GKB GenePA162404346
Clinical trialSOBP
Miscellaneous
canSAR (ICR)SOBP (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOBP
EVEXSOBP
GoPubMedSOBP
iHOPSOBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:46:08 CET 2017

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