Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SOBP (sine oculis binding protein homolog)

Identity

Alias (NCBI)JXC1
MRAMS
HGNC (Hugo) SOBP
HGNC Alias symbFLJ10159
HGNC Previous namesine oculis binding protein homolog (Drosophila)
LocusID (NCBI) 55084
Atlas_Id 74065
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 107490117 and ends at 107661306 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FBRS (16p11.2) / SOBP (6q21)REV3L (6q21) / SOBP (6q21)SOBP (6q21) / ABCA9 (17q24.2)
SOBP (6q21) / AIM1 (6q21)SOBP (6q21) / MET (7q31.2)SOBP ABCA9
SOBP AIM1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SOBP   29256
Cards
Entrez_Gene (NCBI)SOBP    sine oculis binding protein homolog
AliasesJXC1; MRAMS
GeneCards (Weizmann)SOBP
Ensembl hg19 (Hinxton)ENSG00000112320 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112320 [Gene_View]  ENSG00000112320 [Sequence]  chr6:107490117-107661306 [Contig_View]  SOBP [Vega]
ICGC DataPortalENSG00000112320
TCGA cBioPortalSOBP
AceView (NCBI)SOBP
Genatlas (Paris)SOBP
SOURCE (Princeton)SOBP
Genetics Home Reference (NIH)SOBP
Genomic and cartography
GoldenPath hg38 (UCSC)SOBP  -     chr6:107490117-107661306 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOBP  -     6q21   [Description]    (hg19-Feb_2009)
GoldenPathSOBP - 6q21 [CytoView hg19]  SOBP - 6q21 [CytoView hg38]
ImmunoBaseENSG00000112320
Genome Data Viewer NCBISOBP [Mapview hg19]  
OMIM613667   613671   
Gene and transcription
Genbank (Entrez)AK090879 BC014859 BC091526 BC113966 BM684094
RefSeq transcript (Entrez)NM_018013
Consensus coding sequences : CCDS (NCBI)SOBP
Gene ExpressionSOBP [ NCBI-GEO ]   SOBP [ EBI - ARRAY_EXPRESS ]   SOBP [ SEEK ]   SOBP [ MEM ]
Gene Expression Viewer (FireBrowse)SOBP [ Firebrowse - Broad ]
GenevisibleExpression of SOBP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55084
GTEX Portal (Tissue expression)SOBP
Human Protein AtlasENSG00000112320-SOBP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA7XYQ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA7XYQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA7XYQ1
PhosPhoSitePlusA7XYQ1
Domains : Interpro (EBI)RAI2/SOBP   
Domain families : Pfam (Sanger)SOBP (PF15279)   
Domain families : Pfam (NCBI)pfam15279   
Conserved Domain (NCBI)SOBP
SuperfamilyA7XYQ1
AlphaFold pdb e-kbA7XYQ1   
Human Protein Atlas [tissue]ENSG00000112320-SOBP [tissue]
HPRD07650
Protein Interaction databases
DIP (DOE-UCLA)A7XYQ1
IntAct (EBI)A7XYQ1
BioGRIDSOBP
STRING (EMBL)SOBP
ZODIACSOBP
Ontologies - Pathways
QuickGOA7XYQ1
Ontology : AmiGOnucleus  sensory perception of sound  locomotory behavior  SUMO polymer binding  inner ear morphogenesis  metal ion binding  cognition  cochlea development  
Ontology : EGO-EBInucleus  sensory perception of sound  locomotory behavior  SUMO polymer binding  inner ear morphogenesis  metal ion binding  cognition  cochlea development  
NDEx NetworkSOBP
Atlas of Cancer Signalling NetworkSOBP
Wikipedia pathwaysSOBP
Orthology - Evolution
OrthoDB55084
GeneTree (enSembl)ENSG00000112320
Phylogenetic Trees/Animal Genes : TreeFamSOBP
Homologs : HomoloGeneSOBP
Homology/Alignments : Family Browser (UCSC)SOBP
Gene fusions - Rearrangements
Fusion : QuiverSOBP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSOBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SOBP
dbVarSOBP
ClinVarSOBP
MonarchSOBP
1000_GenomesSOBP 
Exome Variant ServerSOBP
GNOMAD BrowserENSG00000112320
Varsome BrowserSOBP
ACMGSOBP variants
VarityA7XYQ1
Genomic Variants (DGV)SOBP [DGVbeta]
DECIPHERSOBP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSOBP 
Mutations
ICGC Data PortalSOBP 
TCGA Data PortalSOBP 
Broad Tumor PortalSOBP
OASIS PortalSOBP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSOBP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSOBP
Mutations and Diseases : HGMDSOBP
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSOBP
DgiDB (Drug Gene Interaction Database)SOBP
DoCM (Curated mutations)SOBP
CIViC (Clinical Interpretations of Variants in Cancer)SOBP
Cancer3DSOBP
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613667    613671   
Orphanet
DisGeNETSOBP
MedgenSOBP
Genetic Testing Registry SOBP
NextProtA7XYQ1 [Medical]
GENETestsSOBP
Target ValidationSOBP
Huge Navigator SOBP [HugePedia]
ClinGenSOBP
Clinical trials, drugs, therapy
MyCancerGenomeSOBP
Protein Interactions : CTDSOBP
Pharm GKB GenePA162404346
PharosA7XYQ1
Clinical trialSOBP
Miscellaneous
canSAR (ICR)SOBP
HarmonizomeSOBP
DataMed IndexSOBP
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSOBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:23:39 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.