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SOCS2-AS1 (SOCS2 antisense RNA 1)

Identity

Alias_namesSOCS2 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SOCS2-AS1
LocusID (NCBI) 144481
Atlas_Id 74066
Location 12q22  [Link to chromosome band 12q22]
Location_base_pair Starts at 93565628 and ends at 93571398 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOCS2-AS1   27054
Cards
Entrez_Gene (NCBI)SOCS2-AS1  144481  SOCS2 antisense RNA 1
Aliases
GeneCards (Weizmann)SOCS2-AS1
Ensembl hg19 (Hinxton)ENSG00000246985 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000246985 [Gene_View]  chr12:93565628-93571398 [Contig_View]  SOCS2-AS1 [Vega]
ICGC DataPortalENSG00000246985
TCGA cBioPortalSOCS2-AS1
AceView (NCBI)SOCS2-AS1
Genatlas (Paris)SOCS2-AS1
WikiGenes144481
SOURCE (Princeton)SOCS2-AS1
Genetics Home Reference (NIH)SOCS2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SOCS2-AS1  -     chr12:93565628-93571398 -  12q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOCS2-AS1  -     12q22   [Description]    (hg19-Feb_2009)
EnsemblSOCS2-AS1 - 12q22 [CytoView hg19]  SOCS2-AS1 - 12q22 [CytoView hg38]
Mapping of homologs : NCBISOCS2-AS1 [Mapview hg19]  SOCS2-AS1 [Mapview hg38]
OMIM617269   
Gene and transcription
Genbank (Entrez)AK054607 AK098304 BC040677
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOCS2-AS1
Cluster EST : UnigeneHs.733244 [ NCBI ]
CGAP (NCI)Hs.733244
Alternative Splicing GalleryENSG00000246985
Gene ExpressionSOCS2-AS1 [ NCBI-GEO ]   SOCS2-AS1 [ EBI - ARRAY_EXPRESS ]   SOCS2-AS1 [ SEEK ]   SOCS2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SOCS2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)144481
GTEX Portal (Tissue expression)SOCS2-AS1
Human Protein AtlasENSG00000246985-SOCS2-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SOCS2-AS1
DMDM Disease mutations144481
Blocks (Seattle)SOCS2-AS1
Human Protein Atlas [tissue]ENSG00000246985-SOCS2-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000246985
BioGRIDSOCS2-AS1
STRING (EMBL)SOCS2-AS1
ZODIACSOCS2-AS1
Ontologies - Pathways
Huge Navigator SOCS2-AS1 [HugePedia]
snp3D : Map Gene to Disease144481
BioCentury BCIQSOCS2-AS1
ClinGenSOCS2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144481
Clinical trialSOCS2-AS1
Miscellaneous
canSAR (ICR)SOCS2-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOCS2-AS1
EVEXSOCS2-AS1
GoPubMedSOCS2-AS1
iHOPSOCS2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:27:30 CET 2017

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