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SOD2-OT1 (SOD2 overlapping transcript 1)

Identity

Other alias-
HGNC (Hugo) SOD2-OT1
LocusID (NCBI) 100129518
Atlas_Id 79593
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 159760259 and ends at 159762332 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SOD2-OT1   53445
Cards
Entrez_Gene (NCBI)SOD2-OT1  100129518  SOD2 overlapping transcript 1
Aliases
GeneCards (Weizmann)SOD2-OT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:159760259-159762332 [Contig_View]  SOD2-OT1 [Vega]
TCGA cBioPortalSOD2-OT1
AceView (NCBI)SOD2-OT1
Genatlas (Paris)SOD2-OT1
WikiGenes100129518
SOURCE (Princeton)SOD2-OT1
Genetics Home Reference (NIH)SOD2-OT1
Genomic and cartography
GoldenPath hg38 (UCSC)SOD2-OT1  -     chr6:159760259-159762332 -  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOD2-OT1  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblSOD2-OT1 - 6q25.3 [CytoView hg19]  SOD2-OT1 - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBISOD2-OT1 [Mapview hg19]  SOD2-OT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097395 BC067868
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOD2-OT1
Cluster EST : UnigeneHs.712708 [ NCBI ]
CGAP (NCI)Hs.712708
Gene ExpressionSOD2-OT1 [ NCBI-GEO ]   SOD2-OT1 [ EBI - ARRAY_EXPRESS ]   SOD2-OT1 [ SEEK ]   SOD2-OT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SOD2-OT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100129518
GTEX Portal (Tissue expression)SOD2-OT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SOD2-OT1
DMDM Disease mutations100129518
Blocks (Seattle)SOD2-OT1
Protein Interaction databases
BioGRIDSOD2-OT1
STRING (EMBL)SOD2-OT1
ZODIACSOD2-OT1
Ontologies - Pathways
Huge Navigator SOD2-OT1 [HugePedia]
snp3D : Map Gene to Disease100129518
BioCentury BCIQSOD2-OT1
ClinGenSOD2-OT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129518
Clinical trialSOD2-OT1
Miscellaneous
canSAR (ICR)SOD2-OT1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOD2-OT1
EVEXSOD2-OT1
GoPubMedSOD2-OT1
iHOPSOD2-OT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 14:32:34 CEST 2018

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