Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SOD2-OT1 (SOD2 overlapping transcript 1)


Alias (NCBI)SOD2
HGNC (Hugo) SOD2-OT1
LocusID (NCBI) 100129518
Atlas_Id 79593
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 159760259 and ends at 159762332 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

HGNC (Hugo)SOD2-OT1   53445
Entrez_Gene (NCBI)SOD2-OT1    SOD2 overlapping transcript 1
GeneCards (Weizmann)SOD2-OT1
Ensembl hg19 (Hinxton)ENSG00000285427 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000285427 [Gene_View]  ENSG00000285427 [Sequence]  chr6:159760259-159762332 [Contig_View]  SOD2-OT1 [Vega]
ICGC DataPortalENSG00000285427
TCGA cBioPortalSOD2-OT1
AceView (NCBI)SOD2-OT1
Genatlas (Paris)SOD2-OT1
SOURCE (Princeton)SOD2-OT1
Genetics Home Reference (NIH)SOD2-OT1
Genomic and cartography
GoldenPath hg38 (UCSC)SOD2-OT1  -     chr6:159760259-159762332 -  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOD2-OT1  -     6q25.3   [Description]    (hg19-Feb_2009)
GoldenPathSOD2-OT1 - 6q25.3 [CytoView hg19]  SOD2-OT1 - 6q25.3 [CytoView hg38]
genome Data Viewer NCBISOD2-OT1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK097395 BC067868
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOD2-OT1
Alternative Splicing GalleryENSG00000285427
Gene ExpressionSOD2-OT1 [ NCBI-GEO ]   SOD2-OT1 [ EBI - ARRAY_EXPRESS ]   SOD2-OT1 [ SEEK ]   SOD2-OT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SOD2-OT1 [ Firebrowse - Broad ]
GenevisibleExpression of SOD2-OT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129518
GTEX Portal (Tissue expression)SOD2-OT1
Human Protein AtlasENSG00000285427-SOD2-OT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SOD2-OT1
Blocks (Seattle)SOD2-OT1
Human Protein Atlas [tissue]ENSG00000285427-SOD2-OT1 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:29:53 CET 2020

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